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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0082219 |
| Transcript ID | Lj0g3v0082219.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Cicer arietinum] gi|502177168|ref|XP_004516023.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 34 | 420 | 387 | 1.50E-226 | – | |
| PANTHER | 34 | 420 | 387 | 1.50E-226 | – | |
| ProSiteProfiles | 48 | 82 | 35 | 6.292 | ||
| ProSiteProfiles | 83 | 113 | 31 | 6.149 | ||
| ProSiteProfiles | 115 | 149 | 35 | 8.681 | ||
| Pfam | 116 | 161 | 46 | 2.10E-09 | ||
| TIGRFAM | 117 | 151 | 35 | 7.50E-06 | ||
| ProSiteProfiles | 150 | 184 | 35 | 5.897 | ||
| ProSiteProfiles | 185 | 215 | 31 | 6.314 | ||
| Pfam | 215 | 263 | 49 | 1.80E-12 | ||
| ProSiteProfiles | 216 | 250 | 35 | 11.345 | ||
| TIGRFAM | 218 | 252 | 35 | 2.70E-07 | ||
| ProSiteProfiles | 286 | 316 | 31 | 8.013 | ||
| Pfam | 289 | 313 | 25 | 0.0081 | ||
| Pfam | 316 | 364 | 49 | 5.60E-11 | ||
| ProSiteProfiles | 317 | 351 | 35 | 10.337 | ||
| TIGRFAM | 319 | 353 | 35 | 3.00E-05 | ||
| ProSiteProfiles | 352 | 386 | 35 | 5.207 | ||
| ProSiteProfiles | 387 | 420 | 34 | 7.892 | ||
| Pfam | 394 | 419 | 26 | 0.034 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj0g3v0082219.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0082219.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.