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Lj0g3v0090019.1

Overview

Field	Value
Gene ID	Lj0g3v0090019
Transcript ID	Lj0g3v0090019.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like [Glycine max] gi\|356544498\|ref\|XP_003540687.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR24015 View details on PTHR24015 Search for proteins/transripts with this domain View external data on PTHR24015	1	212	212	6.30E-67	–
ProSiteProfiles	PS51375 View details on PS51375 Search for proteins/transripts with this domain View external data on PS51375	1	27	27	5.075	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13812 View details on PF13812 Search for proteins/transripts with this domain View external data on PF13812	65	108	44	2.20E-06	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51375 View details on PS51375 Search for proteins/transripts with this domain View external data on PS51375	76	110	35	9.514	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR00756 View details on TIGR00756 Search for proteins/transripts with this domain View external data on TIGR00756	78	111	34	5.70E-06	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51375 View details on PS51375 Search for proteins/transripts with this domain View external data on PS51375	112	144	33	5.842	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR00756 View details on TIGR00756 Search for proteins/transripts with this domain View external data on TIGR00756	114	145	32	0.0015	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13041 View details on PF13041 Search for proteins/transripts with this domain View external data on PF13041	144	191	48	7.60E-15	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51375 View details on PS51375 Search for proteins/transripts with this domain View external data on PS51375	145	179	35	13.187	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR00756 View details on TIGR00756 Search for proteins/transripts with this domain View external data on TIGR00756	148	180	33	3.90E-07	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51375 View details on PS51375 Search for proteins/transripts with this domain View external data on PS51375	180	212	33	11.816	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR00756 View details on TIGR00756 Search for proteins/transripts with this domain View external data on TIGR00756	182	212	31	3.50E-07	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0090019.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0090019.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.