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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF13812
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 227 results. Now displaying 1 of 5 with 50 rows per page. This search has taken 0.048s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0048509.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1| chr0 16331390 16340624 +
2 domain predictions
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Lj0g3v0059929.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532365|ref|XP_003534744.1| chr0 19910883 19913101 +
2 domain predictions
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Lj0g3v0076279.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like [Cicer arietinum] gi|502162909|ref|XP_004512658.1| chr0 29047759 29048507 -
2 domain predictions
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Lj0g3v0090019.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like [Glycine max] gi|356544498|ref|XP_003540687.1| chr0 37020616 37021270 +
2 domain predictions
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Lj0g3v0090229.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g25580-like [Glycine max] gi|356510940|ref|XP_003524191.1| chr0 37116461 37119826 -
2 domain predictions
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Lj0g3v0093789.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Cicer arietinum] gi|502124462|ref|XP_004498539.1| chr0 39375457 39376960 -
2 domain predictions
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Lj0g3v0093799.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Glycine max] gi|356554511|ref|XP_003545589.1| chr0 39375643 39377521 -
2 domain predictions
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Lj0g3v0095179.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Cicer arietinum] gi|502168201|ref|XP_004514343.1| chr0 40077857 40081921 +
2 domain predictions
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Lj0g3v0132249.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Glycine max] gi|356554511|ref|XP_003545589.1| chr0 60327183 60327953 -
2 domain predictions
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Lj0g3v0161609.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g48810-like [Cicer arietinum] gi|502123624|ref|XP_004498194.1| chr0 76036651 76041134 -
2 domain predictions
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Lj0g3v0167179.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like [Glycine max] gi|356503775|ref|XP_003520679.1| chr0 79465053 79466540 -
2 domain predictions
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Lj0g3v0211059.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 106261325 106267356 -
2 domain predictions
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Lj0g3v0213409.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like [Glycine max] gi|356544498|ref|XP_003540687.1| chr0 107742347 107742832 -
2 domain predictions
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Lj0g3v0221459.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Glycine max] gi|356537880|ref|XP_003537434.1| chr0 113670779 113672971 +
2 domain predictions
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Lj0g3v0240839.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like [Glycine max] gi|356544498|ref|XP_003540687.1| chr0 125012063 125012661 +
2 domain predictions
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Lj0g3v0258499.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g29290-like isoform X1 [Cicer arietinum] gi|502102084|ref|XP_004491962.1| chr0 134203808 134207305 +
2 domain predictions
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Lj0g3v0258509.1
n.a. n.a. chr0 134203808 134207653 -
2 domain predictions
 –
Lj0g3v0258519.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502615|ref|XP_003621596.1| chr0 134208502 134212249 -
2 domain predictions
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Lj0g3v0267139.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 138426103 138432104 -
2 domain predictions
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Lj0g3v0282319.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like [Cicer arietinum] gi|502138638|ref|XP_004503478.1| chr0 146360397 146363363 +
2 domain predictions
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Lj0g3v0287429.1
n.a. n.a. chr0 149349000 149354701 -
2 domain predictions
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Lj0g3v0297589.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 154692114 154695246 -
2 domain predictions
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Lj0g3v0324609.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g38730-like [Cicer arietinum] gi|502158124|ref|XP_004511038.1| chr0 169662880 169665064 +
2 domain predictions
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Lj0g3v0328729.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like isoform X2 [Cicer arietinum] gi|502162774|ref|XP_004512612.1| chr0 171844234 171852596 +
2 domain predictions
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Lj0g3v0350309.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Cicer arietinum] gi|502153886|ref|XP_004509496.1| chr0 184064828 184069546 +
2 domain predictions
 –
Lj0g3v0358429.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g60050-like isoform X1 [Cicer arietinum] gi|502109551|ref|XP_004493671.1| chr0 188679884 188682997 +
2 domain predictions
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Lj1g3v0050950.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like [Glycine max] gi|356540307|ref|XP_003538631.1| chr1 283997 287849 +
2 domain predictions
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Lj1g3v0415920.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial-like [Cicer arietinum] gi|502133991|ref|XP_004501962.1| chr1 5569898 5572743 +
2 domain predictions
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Lj1g3v0662090.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Glycine max] gi|356498381|ref|XP_003518031.1| chr1 8612641 8615935 +
2 domain predictions
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Lj1g3v0912010.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial-like [Cicer arietinum] gi|502137317|ref|XP_004503044.1| chr1 11549705 11552060 +
2 domain predictions
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Lj1g3v1526210.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g27460-like isoform X2 [Cicer arietinum] gi|502133180|ref|XP_004501675.1| chr1 18239975 18241830 +
2 domain predictions
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Lj1g3v1548730.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g60960, mitochondrial-like [Glycine max] gi|356535173|ref|XP_003536123.1| chr1 18507702 18508400 +
2 domain predictions
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Lj1g3v1812230.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic-like [Glycine max] gi|356518209|ref|XP_003527773.1| chr1 21951697 21958578 -
2 domain predictions
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Lj1g3v2281670.1
n.a. n.a. chr1 26806315 26814199 -
2 domain predictions
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Lj1g3v2281680.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Glycine max] gi|356508736|ref|XP_003523110.1| chr1 26806315 26809594 +
2 domain predictions
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Lj1g3v2292800.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like isoform X2 [Cicer arietinum] gi|502131125|ref|XP_004500883.1| chr1 26851502 26854782 +
2 domain predictions
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Lj1g3v2980370.1
n.a. n.a. chr1 33961659 33971989 -
2 domain predictions
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Lj1g3v3591750.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic-like [Cicer arietinum] gi|502103476|ref|XP_004492291.1| chr1 41232308 41235423 +
2 domain predictions
 –
Lj1g3v4140620.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isoform X2 [Cicer arietinum] gi|502108147|ref|XP_004493398.1| chr1 49150333 49153716 +
2 domain predictions
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Lj1g3v4241100.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g41720-like [Glycine max] gi|356503440|ref|XP_003520516.1| chr1 50107622 50114554 -
2 domain predictions
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Lj1g3v4241100.2
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g41720-like [Glycine max] gi|356503440|ref|XP_003520516.1| chr1 50107622 50114342 -
2 domain predictions
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Lj1g3v4241100.3
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g41720-like [Glycine max] gi|356503440|ref|XP_003520516.1| chr1 50110253 50112279 -
2 domain predictions
 –
Lj1g3v4276550.1
n.a. n.a. chr1 50337446 50341175 +
2 domain predictions
 –
Lj1g3v4276560.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357509743|ref|XP_003625160.1| chr1 50339011 50341431 -
2 domain predictions
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Lj1g3v4446850.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X1 [Cicer arietinum] gi|502143667|ref|XP_004505419.1| chr1 51925609 51929095 +
2 domain predictions
 –
Lj1g3v4483400.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like [Cicer arietinum] gi|502138077|ref|XP_004503279.1| chr1 52492889 52496633 +
2 domain predictions
 –
Lj1g3v4578920.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Glycine max] gi|356572391|ref|XP_003554352.1| chr1 54372403 54378368 +
2 domain predictions
 –
Lj1g3v4578920.2
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Cicer arietinum] gi|502111023|ref|XP_004493936.1| chr1 54372403 54378368 +
2 domain predictions
 –
Lj1g3v4694400.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like [Glycine max] gi|356503775|ref|XP_003520679.1| chr1 55876255 55879734 +
2 domain predictions
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Lj1g3v4717310.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g36240-like isoform X1 [Cicer arietinum] gi|502111847|ref|XP_004494183.1| chr1 56249764 56253103 -
2 domain predictions
 –