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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0092709 |
| Transcript ID | Lj0g3v0092709.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Glycine max] gi|356540277|ref|XP_003538616.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 366 | 363 | 1.30E-263 | – | |
| PANTHER | 4 | 366 | 363 | 1.30E-263 | – | |
| SUPERFAMILY | 21 | 129 | 109 | 1.12E-93 | – | |
| ProSiteProfiles | 23 | 364 | 342 | 62.506 | ||
| Pfam | 23 | 361 | 339 | 4.20E-61 | ||
| ProSitePatterns | 24 | 39 | 16 | – | ||
| CDD | 24 | 362 | 339 | 0 | – | |
| MobiDBLite | 135 | 159 | 25 | – | – | |
| SUPERFAMILY | 168 | 363 | 196 | 1.12E-93 | – | |
| Gene3D | 180 | 247 | 68 | 4.10E-07 | – | |
| ProSitePatterns | 295 | 313 | 19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of Lj0g3v0092709.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0092709.1, powered by CORGI.
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