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Lj0g3v0102539.1

Overview

Field	Value
Gene ID	Lj0g3v0102539
Transcript ID	Lj0g3v0102539.1
Lotus japonicus genome version	MG20 v3.0
Description	CCP-like protein [Medicago truncatula] gi\|357476541\|ref\|XP_003608556.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR23272 View details on PTHR23272 Search for proteins/transripts with this domain View external data on PTHR23272	29	159	131	1.20E-27	–
SMART	SM00614 View details on SM00614 Search for proteins/transripts with this domain View external data on SM00614	39	85	47	0.0035	IPR003656 Show description in modal box View details on IPR003656 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50808 View details on PS50808 Search for proteins/transripts with this domain View external data on PS50808	39	92	54	10.032	IPR003656 Show description in modal box View details on IPR003656 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF57667 View details on SSF57667 Search for proteins/transripts with this domain View external data on SSF57667	42	83	42	5.59E-06	–
Pfam	PF02892 View details on PF02892 Search for proteins/transripts with this domain View external data on PF02892	42	81	40	1.70E-09	IPR003656 Show description in modal box View details on IPR003656 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	80	106	27	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676

Genome browser

LORE1 insertions 1

30062044

Expression data

Expression pattern

Expression pattern of Lj0g3v0102539.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0102539.1, powered by CORGI.

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