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PF02892

Source: Pfam

Description

BED zinc finger

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Associated Lotus transcripts 74

Transcript Name Description Predicted domains Domain count
Lj0g3v0039869.1
– HAT family dimerization domain containing protein [Medicago truncatula] gi|357515439|ref|XP_003628008.1|
Domains
12
Lj0g3v0066049.1
– Os05g0239150 [Oryza sativa Japonica Group] gi|297723849|ref|NP_001174288.1|
Domains
7
Lj0g3v0076209.1
– Os01g0290300 [Oryza sativa Japonica Group] gi|297596578|ref|NP_001042787.2|
Domains
14
Lj0g3v0078389.1
– HAT dimerisation domain-containing protein-like [Oryza sativa Japonica Group] gi|55297521|dbj|BAD68478.1|
Domains
12
Lj0g3v0080219.1
– Oligoribonuclease [Medicago truncatula] gi|357493709|ref|XP_003617143.1|
Domains
7
Lj0g3v0083979.1
– BED zinc finger,hAT family dimerization domain isoform 5 [Theobroma cacao] gi|508721630|gb|EOY13527.1|
Domains
7
Lj0g3v0091359.1
– OSJNBa0010H02.12 [Oryza sativa Japonica Group] gi|38345474|emb|CAD41225.2|
Domains
7
Lj0g3v0102539.1
– CCP-like protein [Medicago truncatula] gi|357476541|ref|XP_003608556.1|
Domains
7
Lj0g3v0105489.1
–
Domains
7
Lj0g3v0123199.1
– PREDICTED: alanyl-tRNA synthetase-like [Vitis vinifera] gi|359489960|ref|XP_002269399.2|
Domains
4
Lj0g3v0125559.1
– BED zinc finger,hAT family dimerization domain [Theobroma cacao] gi|508701084|gb|EOX92980.1|
Domains
9
Lj0g3v0138429.1
– DNA binding protein [Cucumis melo subsp]. melo] gi|307136239|gb|ADN34075.1|
Domains
6
Lj0g3v0166439.1
– Elongation factor 1-alpha [Medicago truncatula] gi|357443375|ref|XP_003591965.1|
Domains
8
Lj0g3v0167439.1
– HAT family dimerization domain containing protein [Medicago truncatula] gi|357497585|ref|XP_003619081.1|
Domains
6
Lj0g3v0188699.1
– BED zinc finger,hAT family dimerization domain isoform 1 [Theobroma cacao] gi|508721626|gb|EOY13523.1|
Domains
14
Lj0g3v0211649.1
– Elongation factor 1-alpha [Medicago truncatula] gi|357443375|ref|XP_003591965.1|
Domains
9
Lj0g3v0267359.1
– DNA binding protein [Cucumis melo subsp]. melo] gi|307136199|gb|ADN34037.1|
Domains
13
Lj0g3v0318569.1
– DNA binding protein [Cucumis melo subsp]. melo] gi|307136239|gb|ADN34075.1|
Domains
12
Lj0g3v0319489.1
– DNA binding protein [Cucumis melo subsp]. melo] gi|307136239|gb|ADN34075.1|
Domains
11
Lj1g3v3458780.1
– HAT family dimerization domain-containing protein [Puccinia graminis f]. sp. tritici CRL 75-36-700-3] gi|331231421|ref|XP_003328374.1|
Domains
6
Lj1g3v3458780.2
– Nudix hydrolase 23 [Arabidopsis thaliana] gi|18405878|ref|NP_565965.1|
Domains
3
Lj1g3v3458790.1
– Ac transposase [Puccinia graminis f]. sp. tritici CRL 75-36-700-3] gi|331228953|ref|XP_003327143.1|
Domains
5
Lj1g3v4450500.1
– Os10g0170600 [Oryza sativa Japonica Group] gi|297610165|ref|NP_001064234.2|
Domains
10
Lj1g3v4450500.2
– Os10g0170600 [Oryza sativa Japonica Group] gi|297610165|ref|NP_001064234.2|
Domains
11
Lj1g3v4578800.1
– PREDICTED: zinc finger BED domain-containing protein 1-like [Glycine max] gi|356561757|ref|XP_003549145.1|
Domains
14
Lj1g3v4579350.1
– HAT family dimerization domain containing protein [Medicago truncatula] gi|357497585|ref|XP_003619081.1|
Domains
7
Lj2g3v0581790.1
– PREDICTED: CAP-Gly domain-containing linker protein 1-like [Cicer arietinum] gi|502171520|ref|XP_004515051.1|
Domains
8
Lj3g3v0044250.1
– BED zinc finger,hAT family dimerization domain [Theobroma cacao] gi|508778642|gb|EOY25898.1|
Domains
13
Lj3g3v0428350.1
– HAT family dimerization domain containing protein [Medicago truncatula] gi|357497585|ref|XP_003619081.1|
Domains
6
Lj3g3v0718540.2
– Os01g0290300 [Oryza sativa Japonica Group] gi|297596578|ref|NP_001042787.2|
Domains
9
Lj3g3v0964240.1
– HAT family dimerization domain containing protein [Medicago truncatula] gi|357497585|ref|XP_003619081.1|
Domains
7
Lj3g3v1015490.1
– CCP-like protein [Medicago truncatula] gi|357476541|ref|XP_003608556.1|
Domains
7
Lj3g3v2517860.2
– Os11g0613900 [Oryza sativa Japonica Group] gi|297612178|ref|NP_001068267.2|
Domains
7
Lj5g3v0817430.1
– HAT family dimerization domain containing protein [Medicago truncatula] gi|357498113|ref|XP_003619345.1|
Domains
10
Lj6g3v0974680.2
– Uncharacterized protein TCM_001680 [Theobroma cacao] gi|508700914|gb|EOX92810.1|
Domains
3
Lj6g3v1126410.1
– DNA binding protein [Cucumis melo subsp]. melo] gi|307136199|gb|ADN34037.1|
Domains
13
Lj6g3v1371890.1
– Oligoribonuclease [Medicago truncatula] gi|357493709|ref|XP_003617143.1|
Domains
8
LotjaGi1g1v0238100_LC.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|K7KE04|K7KE04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0238100_LC
Domains
8
LotjaGi1g1v0238100_LC.2
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|K7KE04|K7KE04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0238100_LC
Domains
8
LotjaGi1g1v0258900_LC.1
– HAT transposon superfamily; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|Q9D9R0|RN125_MOUSE E3 ubiquitin-protein ligase RNF125; TrEMBL-Plants: tr|A0A1D5U7L1|A0A1D5U7L1_WHEAT Uncharacterized protein; Found in the gene: LotjaGi1g1v0258900_LC
Domains
6
LotjaGi1g1v0276900_LC.1
– HAT transposon superfamily; TAIR: AT1G79740.1 hAT transposon superfamily; Swiss-Prot: sp|O64146|DPOL_BPSPB DNA-directed DNA polymerase; TrEMBL-Plants: tr|A0A0S3RDX3|A0A0S3RDX3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0276900_LC
Domains
11
LotjaGi1g1v0276900_LC.2
– HAT transposon superfamily; TAIR: AT1G79740.1 hAT transposon superfamily; Swiss-Prot: sp|O64146|DPOL_BPSPB DNA-directed DNA polymerase; TrEMBL-Plants: tr|A0A0S3RDX3|A0A0S3RDX3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0276900_LC
Domains
11
LotjaGi1g1v0297300_LC.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151R6M7|A0A151R6M7_CAJCA Putative AC transposase; Found in the gene: LotjaGi1g1v0297300_LC
Domains
11
LotjaGi1g1v0297300_LC.4
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151R6M7|A0A151R6M7_CAJCA Putative AC transposase; Found in the gene: LotjaGi1g1v0297300_LC
Domains
11
LotjaGi1g1v0511400.1
– BED zinc finger and hAT dimerization domain-containing protein; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151R6M7|A0A151R6M7_CAJCA Putative AC transposase; Found in the gene: LotjaGi1g1v0511400
Domains
17
LotjaGi1g1v0582100_LC.1
– Zinc finger BED domain-containing protein DAYSLEEPER; TAIR: AT2G42070.1 nudix hydrolase homolog 23; Swiss-Prot: sp|Q0JMB2|RSLE4_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 4; TrEMBL-Plants: tr|A0A0K9QH16|A0A0K9QH16_SPIOL Uncharacterized protein; Found in the gene: LotjaGi1g1v0582100_LC
Domains
9
LotjaGi1g1v0695100.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q9M2N5|DSLE_ARATH Zinc finger BED domain-containing protein DAYSLEEPER; TrEMBL-Plants: tr|V7CA32|V7CA32_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0695100
Domains
15
LotjaGi2g1v0084800_LC.1
– HAT dimerization domain-containing protein; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|O62830|PPM1B_BOVIN Protein phosphatase 1B; TrEMBL-Plants: tr|K7L6X7|K7L6X7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0084800_LC
Domains
5
LotjaGi2g1v0084800_LC.2
– HAT dimerization domain-containing protein; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|O62830|PPM1B_BOVIN Protein phosphatase 1B; TrEMBL-Plants: tr|K7L6X7|K7L6X7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0084800_LC
Domains
5
LotjaGi2g1v0084800_LC.3
– HAT dimerization domain-containing protein; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|O62830|PPM1B_BOVIN Protein phosphatase 1B; TrEMBL-Plants: tr|K7L6X7|K7L6X7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0084800_LC
Domains
5
LotjaGi2g1v0175600.1
– BED zinc finger family protein; TAIR: AT1G79740.1 hAT transposon superfamily; Swiss-Prot: sp|Q0JMB2|RSLE4_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 4; TrEMBL-Plants: tr|K7LE93|K7LE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0175600
Domains
9
LotjaGi2g1v0215100.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi2g1v0215100
Domains
17
LotjaGi3g1v0088200_LC.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.2 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|K7KE04|K7KE04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0088200_LC
Domains
10
LotjaGi3g1v0088200_LC.2
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|K7KE04|K7KE04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0088200_LC
Domains
10
LotjaGi3g1v0146800.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RYB6|A0A151RYB6_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0146800
Domains
14
LotjaGi3g1v0182200.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0182200
Domains
17
LotjaGi3g1v0182200.2
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0182200
Domains
17
LotjaGi3g1v0257700.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|A0A0B2QXC0|A0A0B2QXC0_GLYSO Putative AC transposase; Found in the gene: LotjaGi3g1v0257700
Domains
15
LotjaGi3g1v0257700.2
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|A0A0B2QXC0|A0A0B2QXC0_GLYSO Putative AC transposase; Found in the gene: LotjaGi3g1v0257700
Domains
15
LotjaGi3g1v0263100.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0263100
Domains
13
LotjaGi3g1v0263100.2
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0263100
Domains
13
LotjaGi3g1v0263100.3
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0263100
Domains
13
LotjaGi3g1v0292800_LC.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P03010|TRAC9_MAIZE Putative AC9 transposase; TrEMBL-Plants: tr|M5X4E3|M5X4E3_PRUPE Uncharacterized protein; Found in the gene: LotjaGi3g1v0292800_LC
Domains
10
LotjaGi3g1v0354000_LC.1
– BED zinc finger,hAT family dimerization domain, putative; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151R6M7|A0A151R6M7_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0354000_LC
Domains
13
LotjaGi5g1v0286000.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151R6M7|A0A151R6M7_CAJCA Putative AC transposase; Found in the gene: LotjaGi5g1v0286000
Domains
21
LotjaGi6g1v0006700.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|K7KE04|K7KE04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0006700
Domains
15
LotjaGi6g1v0063100_LC.1
– Transcription initiation factor TFIID subunit 2; TAIR: AT1G73960.1 TBP-associated factor 2; Swiss-Prot: sp|Q8LPF0|TAF2_ARATH Transcription initiation factor TFIID subunit 2; TrEMBL-Plants: tr|K7KNH3|K7KNH3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063100_LC
Domains
14
LotjaGi6g1v0063100_LC.3
– BED zinc finger,hAT family dimerization domain; TAIR: AT4G21640.1 Subtilase family protein; Swiss-Prot: sp|Q0JMB2|RSLE4_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 4; TrEMBL-Plants: tr|A0A0J8CKV8|A0A0J8CKV8_BETVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0063100_LC
Domains
6
LotjaGi6g1v0146000_LC.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|M5X4E3|M5X4E3_PRUPE Uncharacterized protein; Found in the gene: LotjaGi6g1v0146000_LC
Domains
11
LotjaGi6g1v0159700.1
– Zinc finger BED domain-containing protein DAYSLEEPER; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RYP2|A0A151RYP2_CAJCA Putative AC transposase; Found in the gene: LotjaGi6g1v0159700
Domains
14
LotjaGi6g1v0159700.2
– Zinc finger BED domain-containing protein DAYSLEEPER; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RYP2|A0A151RYP2_CAJCA Putative AC transposase; Found in the gene: LotjaGi6g1v0159700
Domains
14
LotjaGi6g1v0217200.1
– HAT transposon superfamily; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|A8F530|SECA_PSELT Protein translocase subunit SecA; TrEMBL-Plants: tr|A0A0L9T6Q4|A0A0L9T6Q4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0217200
Domains
13
LotjaGi6g1v0217200.2
– HAT transposon superfamily; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|A8F530|SECA_PSELT Protein translocase subunit SecA; TrEMBL-Plants: tr|A0A0L9T6Q4|A0A0L9T6Q4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0217200
Domains
13
LotjaGi6g1v0217200.3
– HAT transposon superfamily; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|B8E2F5|TRMFO_DICTD Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO; TrEMBL-Plants: tr|A0A0L9T6Q4|A0A0L9T6Q4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0217200
Domains
11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 1.35