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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0107269 |
| Transcript ID | Lj0g3v0107269.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508786429|gb|EOY33685.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 198 | 198 | 0 | ||
| PANTHER | 1 | 198 | 198 | 0 | – | |
| MobiDBLite | 1 | 36 | 36 | – | – | |
| Pfam | 38 | 181 | 144 | 6.90E-10 | ||
| MobiDBLite | 179 | 219 | 41 | – | – | |
| PANTHER | 239 | 248 | 10 | 0 | – | |
| PANTHER | 239 | 248 | 10 | 0 | ||
| PANTHER | 273 | 940 | 668 | 0 | – | |
| PANTHER | 273 | 940 | 668 | 0 | ||
| Pfam | 532 | 673 | 142 | 5.50E-34 | ||
| MobiDBLite | 771 | 793 | 23 | – | – | |
| MobiDBLite | 829 | 855 | 27 | – | – | |
| MobiDBLite | 983 | 1013 | 31 | – | – | |
| PANTHER | 1043 | 1205 | 163 | 0 | – | |
| PANTHER | 1043 | 1205 | 163 | 0 | ||
| Pfam | 1061 | 1188 | 128 | 9.60E-08 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins. |
Expression pattern of Lj0g3v0107269.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0107269.1, powered by CORGI.
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