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GO:0000184

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Full defintion The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
Subterm of

Relationships

The relationship of GO:0000184 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCma
PMID
A perfect message: RNA surveillance and nonsense-mediated decay.Hentze MW, Kulozik AE
Cell. 1999 Feb 5; 96 (3): 307–10.PMID: 10025395

Associated Lotus transcripts 17

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0107269.1
– Uncharacterized protein isoform 1 [Theobroma cacao] gi|508786429|gb|EOY33685.1|
GO terms
1
Lj2g3v1987530.1
– PREDICTED: regulator of nonsense transcripts 1 homolog isoform X2 [Cicer arietinum] gi|502160480|ref|XP_004511759.1|
GO terms
6
Lj3g3v1113470.1
– Uncharacterized protein isoform 1 [Theobroma cacao] gi|508786429|gb|EOY33685.1|
GO terms
1
LotjaGi2g1v0417100.1
– Regulator of nonsense transcripts 1-like protein; TAIR: AT5G47010.1 RNA helicase; Swiss-Prot: sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog; TrEMBL-Plants: tr|I1J9N5|I1J9N5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0417100
GO terms
6
LotjaGi2g1v0449700.1
– TIR-NBS-LRR class disease resistance protein; TAIR: AT5G18370.1 disease resistance protein (TIR-NBS-LRR class) family protein; Swiss-Prot: sp|Q5PQS6|SMG9_RAT Protein SMG9; TrEMBL-Plants: tr|V7CID3|V7CID3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0449700
GO terms
1
LotjaGi3g1v0169100.1
– Protein SMG8; TAIR: AT1G01550.1 BPS1-like protein (DUF793); Swiss-Prot: sp|A1A4J7|SMG8_BOVIN Protein SMG8; TrEMBL-Plants: tr|K7M344|K7M344_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0169100
GO terms
1
LotjaGi3g1v0336800.1
– Regulator of nonsense transcripts UPF3 protein; TAIR: AT1G33980.1 Smg-4/UPF3 family protein; Swiss-Prot: sp|Q9FVW4|RENT3_ARATH Regulator of nonsense transcripts UPF3; TrEMBL-Plants: tr|A0A151RFI8|A0A151RFI8_CAJCA Regulator of nonsense transcripts 3A; Found in the gene: LotjaGi3g1v0336800
GO terms
1
LotjaGi3g1v0502700.1
– Serine/threonine-protein kinase; TAIR: AT1G50030.1 target of rapamycin; Swiss-Prot: sp|Q8BKX6|SMG1_MOUSE Serine/threonine-protein kinase SMG1; TrEMBL-Plants: tr|K7LPC3|K7LPC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0502700
GO terms
3
LotjaGi6g1v0175200.1
– TIR-NBS-LRR class disease resistance protein; TAIR: AT5G18370.1 disease resistance protein (TIR-NBS-LRR class) family protein; Swiss-Prot: sp|Q5PQS6|SMG9_RAT Protein SMG9; TrEMBL-Plants: tr|V7CID3|V7CID3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0175200
GO terms
1
LotjaGi6g1v0212500.1
– Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500
GO terms
1
LotjaGi6g1v0212500.2
– Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500
GO terms
1
LotjaGi6g1v0212500.3
– Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500
GO terms
1
LotjaGi6g1v0212500.4
– Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500
GO terms
1
LotjaGi6g1v0212500.5
– Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500
GO terms
1
LotjaGi6g1v0212500.6
– Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500
GO terms
1
LotjaGi6g1v0212500.7
– Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500
GO terms
1
LotjaGi6g1v0212500.8
– Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500
GO terms
1

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0000184
Biological process Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 1 5.88