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GO:0000956

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Nuclear-transcribed mRNA catabolic process
Full defintion The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
Subterm of

Relationships

The relationship of GO:0000956 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0000956, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCkrc

Associated Lotus transcripts 11

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj3g3v0478010.1
– PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like [Glycine max] gi|356512406|ref|XP_003524910.1|
GO terms
2
Lj4g3v2573940.1
– PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like [Glycine max] gi|356512406|ref|XP_003524910.1|
GO terms
2
LotjaGi1g1v0598200.1
– Small nuclear ribonucleoprotein; TAIR: AT1G76860.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B; TrEMBL-Plants: tr|A0A0J8FV31|A0A0J8FV31_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0598200
GO terms
2
LotjaGi1g1v0765900.1
– Small nuclear ribonucleoprotein SM D3, putative; TAIR: AT5G27720.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4; TrEMBL-Plants: tr|A0A1J7ICX8|A0A1J7ICX8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0765900
GO terms
2
LotjaGi2g1v0132800.1
– Small nuclear ribonucleoprotein; TAIR: AT1G76860.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B; TrEMBL-Plants: tr|Q5N9F1|Q5N9F1_ORYSJ protein; Found in the gene: LotjaGi2g1v0132800
GO terms
2
LotjaGi3g1v0058700.1
– Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700
GO terms
2
LotjaGi3g1v0058700.2
– Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700
GO terms
2
LotjaGi3g1v0058700.3
– Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700
GO terms
2
LotjaGi3g1v0058700.4
– Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700
GO terms
2
LotjaGi3g1v0412300.1
– Small nuclear ribonucleoprotein; TAIR: AT3G14080.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q8LFL8|LSM1B_ARATH Sm-like protein LSM1B; TrEMBL-Plants: tr|A0A0B2P1D2|A0A0B2P1D2_GLYSO U6 snRNA-associated Sm-like protein LSm1; Found in the gene: LotjaGi3g1v0412300
GO terms
1
LotjaGi5g1v0251400.1
– Small nuclear ribonucleoprotein SM D3, putative; TAIR: AT5G27720.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4; TrEMBL-Plants: tr|A0A1J7ICX8|A0A1J7ICX8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251400
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0000956
Biological process Nuclear-transcribed mRNA catabolic process 1 9.09