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Lj0g3v0120939.1

Overview

Field Value
Gene ID Lj0g3v0120939
Transcript ID Lj0g3v0120939.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: LOW QUALITY PROTEIN: acyl-CoA-binding domain-containing protein 4 [Vitis vinifera] gi|359487672|ref|XP_002277646.2|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23244
11 411 401 2.00E-243 –
PANTHER
PTHR23244:SF294
11 411 401 2.00E-243 –
SUPERFAMILY
SSF117281
21 222 202 1.18E-49 –
Gene3D
G3DSA:2.120.10.80
26 223 198 2.20E-53
IPR015915
Pfam
PF13415
38 85 48 7.30E-10 –
SMART
SM00612
40 89 50 12
IPR006652
Pfam
PF13418
128 170 43 9.10E-08 –
Pfam
PF13418
181 229 49 3.40E-04 –
SMART
SM00612
193 242 50 0.13
IPR006652
Pfam
PF01344
232 272 41 6.90E-09
IPR006652
SMART
SM00612
243 292 50 1.2
IPR006652
MobiDBLite
mobidb-lite
409 436 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj0g3v0120939.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0120939.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.