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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006652
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 91 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.431s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0055579.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g27150-like [Glycine max] gi|356558716|ref|XP_003547649.1| chr0 17962220 17963081 -
2 domain predictions
1 GO term
Lj0g3v0057049.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g55270-like [Glycine max] gi|356511684|ref|XP_003524553.1| chr0 18619009 18622036 +
3 domain predictions
1 GO term
Lj0g3v0120939.1
n.a. PREDICTED: LOW QUALITY PROTEIN: acyl-CoA-binding domain-containing protein 4 [Vitis vinifera] gi|359487672|ref|XP_002277646.2| chr0 53828260 53833168 +
3 domain predictions
1 GO term
Lj0g3v0120939.2
n.a. PREDICTED: LOW QUALITY PROTEIN: acyl-CoA-binding domain-containing protein 4 [Vitis vinifera] gi|359487672|ref|XP_002277646.2| chr0 53828260 53833168 +
3 domain predictions
1 GO term
Lj0g3v0258809.1
n.a. PREDICTED: F-box/kelch-repeat protein At5g60570-like [Glycine max] gi|356550208|ref|XP_003543480.1| chr0 134378608 134380775 +
3 domain predictions
1 GO term
Lj0g3v0258809.2
n.a. PREDICTED: F-box/kelch-repeat protein At5g60570-like [Glycine max] gi|356550208|ref|XP_003543480.1| chr0 134378608 134380775 +
3 domain predictions
1 GO term
Lj0g3v0263699.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g74510-like [Glycine max] gi|356516772|ref|XP_003527067.1| chr0 136695088 136699610 -
3 domain predictions
1 GO term
Lj0g3v0263709.1
n.a. n.a. chr0 136696334 136698107 +
3 domain predictions
1 GO term
Lj0g3v0302029.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g22040-like [Glycine max] gi|356515826|ref|XP_003526599.1| chr0 157051484 157054102 +
3 domain predictions
1 GO term
Lj0g3v0354469.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP4-like isoform X1 [Cicer arietinum] gi|502157205|ref|XP_004510793.1| chr0 186685736 186688398 -
2 domain predictions
1 GO term
Lj1g3v1218950.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP6-like [Cicer arietinum] gi|502136860|ref|XP_004502867.1| chr1 14808163 14810332 +
3 domain predictions
1 GO term
Lj1g3v2390160.1
n.a. Kelch-like protein [Medicago truncatula] gi|357506211|ref|XP_003623394.1| chr1 28158494 28160219 -
2 domain predictions
1 GO term
Lj1g3v2390160.2
n.a. Kelch-like protein [Medicago truncatula] gi|357506211|ref|XP_003623394.1| chr1 28158815 28160219 -
2 domain predictions
1 GO term
Lj1g3v3384760.1
n.a. PREDICTED: F-box/kelch-repeat protein At5g42350-like [Glycine max] gi|356508586|ref|XP_003523036.1| chr1 39007629 39010643 +
3 domain predictions
1 GO term
Lj1g3v4446660.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max] gi|356504941|ref|XP_003521251.1| chr1 51902345 51903369 -
2 domain predictions
1 GO term
Lj1g3v4446670.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max] gi|356504941|ref|XP_003521251.1| chr1 51902780 51903369 -
2 domain predictions
1 GO term
Lj2g3v1296270.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP11-like isoform X1 [Cicer arietinum] gi|502093701|ref|XP_004490024.1| chr2 20738477 20742397 -
3 domain predictions
1 GO term
Lj3g3v0139510.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g80440-like [Cicer arietinum] gi|502080902|ref|XP_004486716.1| chr3 1082032 1084046 +
3 domain predictions
1 GO term
Lj3g3v0787290.1
n.a. PREDICTED: nitrile-specifier protein 5-like [Cicer arietinum] gi|502088392|ref|XP_004488809.1| chr3 9384024 9386562 +
2 domain predictions
1 GO term
Lj3g3v2058580.1
n.a. PREDICTED: kelch repeat-containing protein At3g27220-like isoform X1 [Cicer arietinum] gi|502148068|ref|XP_004507025.1| chr3 26498909 26503236 -
3 domain predictions
1 GO term
Lj3g3v2248230.1
n.a. n.a. chr3 27838880 27843306 -
3 domain predictions
1 GO term
Lj3g3v2385420.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g22040-like [Glycine max] gi|356524860|ref|XP_003531046.1| chr3 29674140 29677369 +
3 domain predictions
1 GO term
Lj4g3v0153680.1
n.a. PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4-like [Cicer arietinum] gi|502149858|ref|XP_004507689.1| chr4 1697188 1703846 +
3 domain predictions
1 GO term
Lj4g3v0338200.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357445771|ref|XP_003593163.1| chr4 4298339 4300501 -
3 domain predictions
1 GO term
Lj4g3v1629950.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g74510-like [Glycine max] gi|356516772|ref|XP_003527067.1| chr4 23897765 23903404 +
3 domain predictions
1 GO term
Lj4g3v1629950.2
n.a. PREDICTED: F-box/kelch-repeat protein At1g74510-like [Glycine max] gi|356516772|ref|XP_003527067.1| chr4 23897765 23900264 +
3 domain predictions
1 GO term
Lj4g3v1877020.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g55270-like [Glycine max] gi|356511684|ref|XP_003524553.1| chr4 25773175 25774446 +
3 domain predictions
1 GO term
Lj4g3v2370480.2
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max] gi|356563867|ref|XP_003550179.1| chr4 32642746 32650367 +
2 domain predictions
1 GO term
Lj4g3v2539170.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g67480-like [Glycine max] gi|356525146|ref|XP_003531188.1| chr4 34144324 34146909 -
3 domain predictions
1 GO term
Lj4g3v2603890.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g55270-like [Cicer arietinum] gi|502140780|ref|XP_004504335.1| chr4 34965385 34969514 -
3 domain predictions
1 GO term
Lj4g3v2603970.1
n.a. PREDICTED: F-box/kelch-repeat protein At2g44130-like [Cicer arietinum] gi|502140767|ref|XP_004504329.1| chr4 35001857 35003373 -
3 domain predictions
1 GO term
Lj5g3v1699040.1
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max] gi|356576361|ref|XP_003556301.1| chr5 24550871 24556764 -
2 domain predictions
1 GO term
Lj5g3v1770480.1
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform 1 [Glycine max] gi|356576309|ref|XP_003556275.1| chr5 25171245 25174479 +
2 domain predictions
1 GO term
Lj6g3v1946250.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g30090-like [Glycine max] gi|356549104|ref|XP_003542937.1| chr6 22145640 22148117 -
3 domain predictions
1 GO term
Lj6g3v2055760.1
n.a. PREDICTED: kelch-like protein 8-like [Glycine max] gi|356549387|ref|XP_003543075.1| chr6 24315980 24317735 +
3 domain predictions
1 GO term
Lj6g3v2218700.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357445771|ref|XP_003593163.1| chr6 25852978 25855180 +
3 domain predictions
1 GO term
LotjaGi1g1v0217700.1
n.a. Kelch repeat-containing protein; TAIR: AT1G74510.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9CA63|FBK29_ARATH F-box/kelch-repeat protein At1g74510; TrEMBL-Plants: tr|A0A0S3RG77|A0A0S3RG77_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0217700 LjG1.1_chr1 48192944 48198907 +
3 domain predictions
1 GO term
LotjaGi1g1v0217700.2
n.a. Kelch repeat-containing protein; TAIR: AT1G74510.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9CA63|FBK29_ARATH F-box/kelch-repeat protein At1g74510; TrEMBL-Plants: tr|A0A0S3RG77|A0A0S3RG77_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0217700 LjG1.1_chr1 48194009 48195334 +
3 domain predictions
1 GO term
LotjaGi1g1v0247400.1
n.a. Kelch repeat-containing protein; TAIR: AT1G22040.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LM55|FBK8_ARATH F-box/kelch-repeat protein At1g22040; TrEMBL-Plants: tr|I1KA24|I1KA24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0247400 LjG1.1_chr1 59456929 59459911 +
3 domain predictions
1 GO term
LotjaGi1g1v0247400.2
n.a. Kelch repeat-containing protein; TAIR: AT1G22040.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LM55|FBK8_ARATH F-box/kelch-repeat protein At1g22040; TrEMBL-Plants: tr|I1KA24|I1KA24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0247400 LjG1.1_chr1 59458021 59459409 +
3 domain predictions
1 GO term
LotjaGi1g1v0311900.1
n.a. Kelch repeat-containing protein; TAIR: AT2G21950.1 SKP1 interacting partner 6; Swiss-Prot: sp|Q9SJ04|SKIP6_ARATH F-box/kelch-repeat protein SKIP6; TrEMBL-Plants: tr|G7JAA2|G7JAA2_MEDTR SKP1 interacting partner 6; Found in the gene: LotjaGi1g1v0311900 LjG1.1_chr1 75602286 75609261 +
3 domain predictions
1 GO term
LotjaGi1g1v0447400.1
n.a. Kelch-like protein; TAIR: AT5G01660.1 influenza virus NS1A-binding protein; Swiss-Prot: sp|Q6TDP4|KLH17_HUMAN Kelch-like protein 17; TrEMBL-Plants: tr|K7MTP9|K7MTP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0447400 LjG1.1_chr1 94626763 94638367 -
3 domain predictions
1 GO term
LotjaGi1g1v0567400.1
n.a. F-box/kelch-repeat protein; TAIR: AT5G42350.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9FII2|FK117_ARATH F-box/kelch-repeat protein At5g42350; TrEMBL-Plants: tr|I1JST5|I1JST5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0567400 LjG1.1_chr1 110073104 110077287 +
3 domain predictions
1 GO term
LotjaGi1g1v0567400.2
n.a. F-box/kelch-repeat protein; TAIR: AT5G42350.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9FII2|FK117_ARATH F-box/kelch-repeat protein At5g42350; TrEMBL-Plants: tr|I1JST5|I1JST5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0567400 LjG1.1_chr1 110073978 110075723 +
3 domain predictions
1 GO term
LotjaGi1g1v0623800.1
n.a. Kelch repeat-containing protein; TAIR: AT3G27150.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LI89|FBK70_ARATH F-box/kelch-repeat protein At3g27150; TrEMBL-Plants: tr|A0A072TX07|A0A072TX07_MEDTR Galactose oxidase/kelch repeat protein; Found in the gene: LotjaGi1g1v0623800 LjG1.1_chr1 117115133 117119060 +
3 domain predictions
1 GO term
LotjaGi1g1v0623800.2
n.a. Kelch repeat-containing protein; TAIR: AT3G27150.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LI89|FBK70_ARATH F-box/kelch-repeat protein At3g27150; TrEMBL-Plants: tr|A0A072TX07|A0A072TX07_MEDTR Galactose oxidase/kelch repeat protein; Found in the gene: LotjaGi1g1v0623800 LjG1.1_chr1 117116841 117118058 +
3 domain predictions
1 GO term
LotjaGi1g1v0711800.1
n.a. Kelch repeat F-box protein; TAIR: AT4G03030.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q0V7S6|FK125_ARATH F-box/kelch-repeat protein OR23; TrEMBL-Plants: tr|K7KFD6|K7KFD6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0711800 LjG1.1_chr1 127986132 127991305 +
3 domain predictions
1 GO term
LotjaGi1g1v0717000.1
n.a. Kelch repeat F-box protein; TAIR: AT3G63220.2 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M1W7|SKI30_ARATH F-box/kelch-repeat protein SKIP30; TrEMBL-Plants: tr|A0A151RU54|A0A151RU54_CAJCA F-box/kelch-repeat protein SKIP30; Found in the gene: LotjaGi1g1v0717000 LjG1.1_chr1 128528277 128532273 +
3 domain predictions
1 GO term
LotjaGi1g1v0717000.2
n.a. Kelch repeat F-box protein; TAIR: AT3G63220.2 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M1W7|SKI30_ARATH F-box/kelch-repeat protein SKIP30; TrEMBL-Plants: tr|A0A151RU54|A0A151RU54_CAJCA F-box/kelch-repeat protein SKIP30; Found in the gene: LotjaGi1g1v0717000 LjG1.1_chr1 128530596 128531633 +
3 domain predictions
1 GO term
LotjaGi2g1v0060500.1
n.a. Kelch repeat F-box protein; TAIR: AT3G63220.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M1W7|SKI30_ARATH F-box/kelch-repeat protein SKIP30; TrEMBL-Plants: tr|A0A151RU54|A0A151RU54_CAJCA F-box/kelch-repeat protein SKIP30; Found in the gene: LotjaGi2g1v0060500 LjG1.1_chr2 12826976 12839010 -
3 domain predictions
1 GO term