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Lj0g3v0158339.1

Overview

Field Value
Gene ID Lj0g3v0158339
Transcript ID Lj0g3v0158339.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: auxin-responsive protein IAA29-like [Cicer arietinum] gi|502132393|ref|XP_004501338.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31734:SF38
1 221 221 1.20E-79 –
PANTHER
PTHR31734
1 221 221 1.20E-79
IPR003311
Pfam
PF02309
3 222 220 3.80E-35
IPR033389
MobiDBLite
mobidb-lite
73 96 24 – –
Coils
Coil
76 96 21 – –
SUPERFAMILY
SSF54277
133 217 85 6.08E-08 –
ProSiteProfiles
PS51745
139 226 88 19.025
IPR000270

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0158339.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0158339.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.