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Lj0g3v0173539.1

Overview

Field Value
Gene ID Lj0g3v0173539
Transcript ID Lj0g3v0173539.1
Lotus japonicus genome version MG20 v3.0
Description Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24015
1 350 350 8.40E-169 –
PANTHER
PTHR24015:SF547
1 350 350 8.40E-169 –
Pfam
PF13041
21 69 49 6.30E-15
IPR002885
ProSiteProfiles
PS51375
22 56 35 10.534
IPR002885
Gene3D
G3DSA:1.25.40.10
22 222 201 2.60E-04
IPR011990
TIGRFAM
TIGR00756
24 58 35 3.90E-06
IPR002885
SUPERFAMILY
SSF81901
29 257 229 2.30E-05 –
ProSiteProfiles
PS51375
57 91 35 11.17
IPR002885
TIGRFAM
TIGR00756
59 92 34 3.50E-06
IPR002885
Pfam
PF13041
92 140 49 9.30E-11
IPR002885
ProSiteProfiles
PS51375
92 126 35 10.391
IPR002885
TIGRFAM
TIGR00756
94 127 34 1.80E-05
IPR002885
ProSiteProfiles
PS51375
127 161 35 10.523
IPR002885
TIGRFAM
TIGR00756
130 163 34 4.20E-07
IPR002885
Pfam
PF13041
161 210 50 2.20E-17
IPR002885
ProSiteProfiles
PS51375
162 196 35 12.814
IPR002885
TIGRFAM
TIGR00756
164 198 35 2.00E-08
IPR002885
ProSiteProfiles
PS51375
197 231 35 12.627
IPR002885
TIGRFAM
TIGR00756
199 233 35 1.50E-08
IPR002885
Pfam
PF13041
231 280 50 2.30E-16
IPR002885
ProSiteProfiles
PS51375
232 266 35 11.444
IPR002885
TIGRFAM
TIGR00756
234 268 35 7.70E-07
IPR002885
ProSiteProfiles
PS51375
267 301 35 10.72
IPR002885
TIGRFAM
TIGR00756
270 296 27 8.20E-05
IPR002885
Pfam
PF13041
301 350 50 2.00E-12
IPR002885
ProSiteProfiles
PS51375
302 336 35 10.194
IPR002885
TIGRFAM
TIGR00756
304 332 29 2.90E-06
IPR002885
ProSiteProfiles
PS51375
337 354 18 5.152
IPR002885

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0173539.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0173539.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.