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Lj0g3v0177819.1

Overview

Field Value
Gene ID Lj0g3v0177819
Transcript ID Lj0g3v0177819.1
Lotus japonicus genome version MG20 v3.0
Description lipoxygenase [Corylus avellana] gi|16904543|emb|CAD10740.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11771:SF48
1 55 55 9.70E-150 –
ProSiteProfiles
PS51393
1 102 102 24.08
IPR013819
PANTHER
PTHR11771
1 55 55 9.70E-150
IPR000907
Pfam
PF00305
3 102 100 2.60E-20
IPR013819
SUPERFAMILY
SSF48484
4 268 265 3.53E-96
IPR013819
Gene3D
G3DSA:4.10.372.10
17 102 86 2.20E-33
IPR027433
PRINTS
PR00468
45 66 22 3.10E-14
IPR001246
PANTHER
PTHR11771
90 269 180 9.70E-150
IPR000907
PANTHER
PTHR11771:SF48
90 269 180 9.70E-150 –
PRINTS
PR00468
93 109 17 3.10E-14
IPR001246
ProSiteProfiles
PS51393
104 271 168 79.467
IPR013819
Gene3D
G3DSA:3.10.450.60
104 184 81 9.00E-34 –
Pfam
PF00305
104 268 165 1.50E-83
IPR013819
PRINTS
PR00087
170 187 18 3.80E-24
IPR013819
Gene3D
G3DSA:1.20.245.10
186 268 83 2.70E-35 –
PRINTS
PR00468
187 211 25 3.10E-14
IPR001246
PRINTS
PR00087
188 205 18 3.80E-24
IPR013819
ProSitePatterns
PS00711
188 202 15 –
IPR020833
PRINTS
PR00087
208 228 21 3.80E-24
IPR013819
ProSitePatterns
PS00081
215 225 11 –
IPR020834

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0016702
Molecular function Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0177819.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0177819.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.