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Lj0g3v0198989.1

Overview

Field Value
Gene ID Lj0g3v0198989
Transcript ID Lj0g3v0198989.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: LOW QUALITY PROTEIN: (3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial-like [Glycine max] gi|356519513|ref|XP_003528417.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31225
3 508 506 7.90E-290 –
PANTHER
PTHR31225:SF0
3 508 506 7.90E-290 –
Pfam
PF01397
7 158 152 7.90E-35
IPR001906
CDD
cd00684
10 504 495 6.52E-146 –
SUPERFAMILY
SSF48239
12 180 169 2.98E-41
IPR008930
Gene3D
G3DSA:1.50.30.10
22 195 174 3.50E-42
IPR001906
SUPERFAMILY
SSF48576
183 503 321 4.60E-86
IPR008949
Pfam
PF03936
188 452 265 2.40E-84
IPR005630
Gene3D
G3DSA:1.10.600.10
197 504 308 1.80E-109
IPR008949

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0010333
Molecular function Terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
Subterm of
GO:0016829
Molecular function Lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj0g3v0198989.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0198989.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.