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Lj0g3v0202489.1

Overview

Field Value
Gene ID Lj0g3v0202489
Transcript ID Lj0g3v0202489.1
Lotus japonicus genome version MG20 v3.0
Description Serine/threonine-protein kinase/endoribonuclease ire-1 [Triticum urartu] gi|474390985|gb|EMS65329.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 22 22 – –
TMHMM
TMhelix
23 45 23 – –
Phobius
TRANSMEMBRANE
23 41 19 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
42 73 32 – –
Phobius
TRANSMEMBRANE
74 98 25 – –
TMHMM
TMhelix
77 99 23 – –
Phobius
CYTOPLASMIC_DOMAIN
99 325 227 – –
ProSiteProfiles
PS50011
109 325 217 17.998
IPR000719
Gene3D
G3DSA:3.30.200.20
113 181 69 1.80E-11 –
SUPERFAMILY
SSF56112
113 194 82 8.70E-27
IPR011009
PANTHER
PTHR13954:SF13
115 192 78 2.50E-24 –
PANTHER
PTHR13954
115 192 78 2.50E-24 –
Pfam
PF00069
117 287 171 8.00E-12
IPR000719
Gene3D
G3DSA:1.10.510.10
200 280 81 1.60E-14 –
PANTHER
PTHR13954
217 251 35 2.50E-24 –
PANTHER
PTHR13954:SF13
217 251 35 2.50E-24 –
SUPERFAMILY
SSF56112
225 307 83 8.70E-27
IPR011009

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj0g3v0202489.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0202489.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.