Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0209939.1

Overview

Field Value
Gene ID Lj0g3v0209939
Transcript ID Lj0g3v0209939.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max] gi|356575019|ref|XP_003555640.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11771:SF42
1 407 407 5.50E-266 –
Gene3D
G3DSA:3.10.450.60
1 83 83 4.10E-32 –
PANTHER
PTHR11771
1 407 407 5.50E-266
IPR000907
ProSiteProfiles
PS51393
1 407 407 184.257
IPR013819
Pfam
PF00305
1 407 407 3.30E-209
IPR013819
SUPERFAMILY
SSF48484
1 406 406 3.27E-171
IPR013819
PRINTS
PR00468
24 48 25 3.00E-13
IPR001246
PRINTS
PR00087
69 86 18 2.00E-22
IPR013819
Gene3D
G3DSA:1.20.245.10
85 406 322 4.20E-131 –
ProSitePatterns
PS00711
87 101 15 –
IPR020833
PRINTS
PR00087
87 104 18 2.00E-22
IPR013819
PRINTS
PR00087
107 127 21 2.00E-22
IPR013819
ProSitePatterns
PS00081
114 124 11 –
IPR020834
PRINTS
PR00468
347 361 15 3.00E-13
IPR001246

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0016702
Molecular function Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj0g3v0209939.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0209939.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.