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Lj0g3v0248759.3

Overview

Field	Value
Gene ID	Lj0g3v0248759
Transcript ID	Lj0g3v0248759.3
Related isoforms 3	Lj0g3v0248759.1 Lj0g3v0248759.2 Lj0g3v0248759.4
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: symplekin-like isoform X1 [Cicer arietinum] gi\|502147349\|ref\|XP_004506749.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR15245:SF25 View details on PTHR15245:SF25 Search for proteins/transripts with this domain View external data on PTHR15245:SF25	6	351	346	0	–
PANTHER	PTHR15245 View details on PTHR15245 Search for proteins/transripts with this domain View external data on PTHR15245	6	351	346	0	–
SUPERFAMILY	SSF48371 View details on SSF48371 Search for proteins/transripts with this domain View external data on SSF48371	36	145	110	1.55E-09	IPR016024 Show description in modal box View details on IPR016024 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.25.10.10 View details on G3DSA:1.25.10.10 Search for proteins/transripts with this domain View external data on G3DSA:1.25.10.10	41	111	71	5.40E-06	IPR011989 Show description in modal box View details on IPR011989 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF11935 View details on PF11935 Search for proteins/transripts with this domain View external data on PF11935	102	321	220	1.30E-39	IPR032460 Show description in modal box View details on IPR032460 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF48371 View details on SSF48371 Search for proteins/transripts with this domain View external data on SSF48371	237	290	54	1.55E-09	IPR016024 Show description in modal box View details on IPR016024 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	336	385	50	–	–
PANTHER	PTHR15245:SF25 View details on PTHR15245:SF25 Search for proteins/transripts with this domain View external data on PTHR15245:SF25	369	658	290	0	–
PANTHER	PTHR15245 View details on PTHR15245 Search for proteins/transripts with this domain View external data on PTHR15245	369	658	290	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	403	427	25	–	–
PANTHER	PTHR15245:SF25 View details on PTHR15245:SF25 Search for proteins/transripts with this domain View external data on PTHR15245:SF25	690	763	74	0	–
PANTHER	PTHR15245 View details on PTHR15245 Search for proteins/transripts with this domain View external data on PTHR15245	690	763	74	0	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 34

Expression data

Expression pattern

Expression pattern of Lj0g3v0248759.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0248759.3, powered by CORGI.

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