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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0252279 |
| Transcript ID | Lj0g3v0252279.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356577033|ref|XP_003556634.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 33 | 33 | 6.939 | ||
| PANTHER | 15 | 54 | 40 | 1.40E-58 | – | |
| Coils | 38 | 41 | 4 | – | – | |
| Coils | 68 | 68 | 1 | – | – | |
| Pfam | 72 | 119 | 48 | 1.70E-14 | ||
| PANTHER | 72 | 243 | 172 | 1.40E-58 | – | |
| ProSiteProfiles | 73 | 107 | 35 | 12.003 | ||
| Gene3D | 77 | 191 | 115 | 1.40E-05 | ||
| TIGRFAM | 77 | 109 | 33 | 1.20E-07 | ||
| ProSiteProfiles | 108 | 142 | 35 | 9.427 | ||
| TIGRFAM | 110 | 139 | 30 | 6.10E-04 | ||
| ProSiteProfiles | 150 | 184 | 35 | 11.794 | ||
| Pfam | 151 | 195 | 45 | 1.10E-12 | ||
| TIGRFAM | 152 | 186 | 35 | 1.00E-07 | ||
| ProSiteProfiles | 185 | 219 | 35 | 7.695 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0252279.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0252279.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.