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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0255679 |
| Transcript ID | Lj0g3v0255679.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Seed lipoxygenase [Medicago truncatula] gi|357513825|ref|XP_003627201.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 34 | 34 | 0 | – | |
| PANTHER | 1 | 34 | 34 | 0 | ||
| SMART | 9 | 172 | 164 | 7.00E-57 | ||
| SUPERFAMILY | 9 | 175 | 167 | 1.80E-50 | ||
| CDD | 10 | 172 | 163 | 9.80E-42 | – | |
| Gene3D | 12 | 184 | 173 | 3.70E-55 | ||
| ProSiteProfiles | 46 | 171 | 126 | 19.906 | ||
| PANTHER | 54 | 316 | 263 | 0 | ||
| PANTHER | 54 | 316 | 263 | 0 | – | |
| Pfam | 75 | 170 | 96 | 1.70E-15 | ||
| PRINTS | 141 | 159 | 19 | 2.30E-84 | ||
| PRINTS | 167 | 188 | 22 | 2.30E-84 | ||
| ProSiteProfiles | 174 | 614 | 441 | 188.577 | ||
| SUPERFAMILY | 176 | 614 | 439 | 9.03E-162 | ||
| Pfam | 184 | 614 | 431 | 5.50E-189 | ||
| Gene3D | 185 | 273 | 89 | 1.70E-42 | – | |
| PRINTS | 206 | 222 | 17 | 2.30E-84 | ||
| PRINTS | 239 | 258 | 20 | 2.30E-84 | ||
| Gene3D | 275 | 363 | 89 | 3.70E-31 | ||
| PRINTS | 306 | 327 | 22 | 2.30E-84 | ||
| PANTHER | 348 | 614 | 267 | 0 | ||
| PANTHER | 348 | 614 | 267 | 0 | – | |
| PRINTS | 351 | 367 | 17 | 2.30E-84 | ||
| Gene3D | 384 | 516 | 133 | 1.90E-51 | – | |
| PRINTS | 390 | 409 | 20 | 2.30E-84 | ||
| PRINTS | 455 | 479 | 25 | 2.30E-84 | ||
| PRINTS | 502 | 519 | 18 | 8.60E-25 | ||
| Gene3D | 518 | 614 | 97 | 3.90E-41 | – | |
| PRINTS | 520 | 537 | 18 | 8.60E-25 | ||
| ProSitePatterns | 520 | 534 | 15 | – | ||
| PRINTS | 540 | 560 | 21 | 8.60E-25 | ||
| ProSitePatterns | 547 | 557 | 11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj0g3v0255679.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0255679.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.