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Lj0g3v0256479.1

Overview

Field Value
Gene ID Lj0g3v0256479
Transcript ID Lj0g3v0256479.1
Lotus japonicus genome version MG20 v3.0
Description Heat shock protein [Medicago truncatula] gi|357503433|ref|XP_003622005.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19375
1 521 521 0 –
PANTHER
PTHR19375:SF227
1 521 521 0 –
Pfam
PF00012
2 521 520 1.70E-180
IPR013126
Gene3D
G3DSA:3.30.30.30
2 27 26 6.30E-09 –
SUPERFAMILY
SSF53067
2 101 100 9.71E-31 –
Gene3D
G3DSA:3.30.420.40
28 117 90 1.90E-45 –
PRINTS
PR00301
56 76 21 9.60E-53
IPR013126
SUPERFAMILY
SSF53067
108 296 189 9.07E-62 –
ProSitePatterns
PS00329
113 126 14 –
IPR018181
Gene3D
G3DSA:3.30.420.40
118 146 29 5.20E-36 –
PRINTS
PR00301
119 129 11 9.60E-53
IPR013126
Gene3D
G3DSA:3.90.640.10
147 227 81 4.30E-32 –
Gene3D
G3DSA:3.30.420.40
232 275 44 5.20E-36 –
PRINTS
PR00301
247 263 17 9.60E-53
IPR013126
ProSitePatterns
PS01036
250 264 15 –
IPR018181
PRINTS
PR00301
279 299 21 9.60E-53
IPR013126
SUPERFAMILY
SSF100920
302 457 156 1.06E-51
IPR029047
PRINTS
PR00301
305 324 20 9.60E-53
IPR013126
Gene3D
G3DSA:2.60.34.10
307 431 125 9.40E-52
IPR029047
PRINTS
PR00301
385 401 17 9.60E-53
IPR013126
Gene3D
G3DSA:1.20.1270.10
432 521 90 5.20E-18
IPR029048
SUPERFAMILY
SSF100934
451 521 71 4.32E-09
IPR029048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj0g3v0256479.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0256479.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.