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Lj0g3v0259999.1

Overview

Field Value
Gene ID Lj0g3v0259999
Transcript ID Lj0g3v0259999.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 233 233 – –
PANTHER
PTHR32212
2 193 192 1.70E-56 –
PANTHER
PTHR32212:SF126
2 193 192 1.70E-56 –
ProSiteProfiles
PS50181
2 50 49 10.637
IPR001810
Gene3D
G3DSA:3.80.10.10
3 197 195 6.40E-11
IPR032675
SUPERFAMILY
SSF81383
3 45 43 5.76E-13
IPR001810
Pfam
PF00646
7 42 36 3.70E-07
IPR001810
SMART
SM00256
8 49 42 3.20E-04
IPR001810
SUPERFAMILY
SSF52047
112 234 123 3.45E-06 –
PANTHER
PTHR32212
229 237 9 1.70E-56 –
PANTHER
PTHR32212:SF126
229 237 9 1.70E-56 –
Phobius
TRANSMEMBRANE
234 253 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
254 254 1 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj0g3v0259999.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0259999.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.