Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0265619.1

Overview

Field	Value
Gene ID	Lj0g3v0265619
Transcript ID	Lj0g3v0265619.1
Related isoforms 1	Lj0g3v0265619.2
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine max] gi\|356495236\|ref\|XP_003516485.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31846:SF8 View details on PTHR31846:SF8 Search for proteins/transripts with this domain View external data on PTHR31846:SF8	1	146	146	8.40E-74	–
PANTHER	PTHR31846 View details on PTHR31846 Search for proteins/transripts with this domain View external data on PTHR31846	1	146	146	8.40E-74	–
ProSiteProfiles	PS51295 View details on PS51295 Search for proteins/transripts with this domain View external data on PS51295	19	115	97	16.697	IPR001890 Show description in modal box View details on IPR001890 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF75471 View details on SSF75471 Search for proteins/transripts with this domain View external data on SSF75471	21	112	92	2.09E-20	IPR001890 Show description in modal box View details on IPR001890 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.110.60 View details on G3DSA:3.30.110.60 Search for proteins/transripts with this domain View external data on G3DSA:3.30.110.60	21	107	87	7.50E-16	IPR001890 Show description in modal box View details on IPR001890 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM01103 View details on SM01103 Search for proteins/transripts with this domain View external data on SM01103	21	104	84	9.90E-13	IPR001890 Show description in modal box View details on IPR001890 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01985 View details on PF01985 Search for proteins/transripts with this domain View external data on PF01985	22	104	83	3.90E-13	IPR001890 Show description in modal box View details on IPR001890 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of View details of GO:0003676

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj0g3v0265619.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0265619.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.