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Lj0g3v0265619.2

Overview

Field Value
Gene ID Lj0g3v0265619
Transcript ID Lj0g3v0265619.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine max] gi|356495236|ref|XP_003516485.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 27 27 – –
PANTHER
PTHR31846
1 111 111 3.90E-230 –
PANTHER
PTHR31846:SF8
1 111 111 3.90E-230 –
MobiDBLite
mobidb-lite
65 126 62 – –
PANTHER
PTHR31846
135 487 353 3.90E-230 –
PANTHER
PTHR31846:SF8
135 487 353 3.90E-230 –
ProSiteProfiles
PS51295
242 338 97 17.366
IPR001890
SUPERFAMILY
SSF75471
243 336 94 1.27E-20
IPR001890
Gene3D
G3DSA:3.30.110.60
243 335 93 6.50E-19
IPR001890
SMART
SM01103
244 327 84 2.10E-14
IPR001890
Pfam
PF01985
244 327 84 1.90E-17
IPR001890
ProSiteProfiles
PS51295
360 456 97 16.697
IPR001890
Gene3D
G3DSA:3.30.110.60
362 448 87 2.10E-15
IPR001890
SMART
SM01103
362 445 84 9.90E-13
IPR001890
SUPERFAMILY
SSF75471
362 453 92 5.89E-20
IPR001890
Pfam
PF01985
363 445 83 1.00E-12
IPR001890

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj0g3v0265619.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0265619.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.