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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0281779 |
| Transcript ID | Lj0g3v0281779.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: organic cation/carnitine transporter 3-like isoform X1 [Cicer arietinum] gi|502168674|ref|XP_004514443.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | – | – | |
| Phobius | 1 | 132 | 132 | – | – | |
| PANTHER | 34 | 519 | 486 | 1.20E-262 | – | |
| PANTHER | 34 | 519 | 486 | 1.20E-262 | – | |
| ProSiteProfiles | 50 | 505 | 456 | 18.758 | ||
| Pfam | 109 | 509 | 401 | 6.30E-25 | ||
| CDD | 110 | 502 | 393 | 5.13E-11 | ||
| SUPERFAMILY | 114 | 511 | 398 | 2.88E-40 | ||
| Gene3D | 125 | 272 | 148 | 8.90E-17 | – | |
| TMHMM | 128 | 150 | 23 | – | – | |
| Phobius | 133 | 151 | 19 | – | – | |
| Phobius | 152 | 159 | 8 | – | – | |
| Phobius | 160 | 183 | 24 | – | – | |
| TMHMM | 162 | 184 | 23 | – | – | |
| Phobius | 184 | 188 | 5 | – | – | |
| Phobius | 189 | 206 | 18 | – | – | |
| TMHMM | 189 | 211 | 23 | – | – | |
| Phobius | 207 | 217 | 11 | – | – | |
| Phobius | 218 | 236 | 19 | – | – | |
| TMHMM | 218 | 240 | 23 | – | – | |
| Phobius | 237 | 247 | 11 | – | – | |
| Phobius | 248 | 267 | 20 | – | – | |
| TMHMM | 250 | 267 | 18 | – | – | |
| Phobius | 268 | 334 | 67 | – | – | |
| Gene3D | 332 | 516 | 185 | 1.30E-11 | – | |
| Phobius | 335 | 352 | 18 | – | – | |
| TMHMM | 335 | 357 | 23 | – | – | |
| Phobius | 353 | 363 | 11 | – | – | |
| TMHMM | 363 | 385 | 23 | – | – | |
| Phobius | 364 | 385 | 22 | – | – | |
| Phobius | 386 | 391 | 6 | – | – | |
| TMHMM | 392 | 414 | 23 | – | – | |
| Phobius | 392 | 413 | 22 | – | – | |
| Phobius | 414 | 418 | 5 | – | – | |
| TMHMM | 418 | 440 | 23 | – | – | |
| Phobius | 419 | 439 | 21 | – | – | |
| Phobius | 440 | 450 | 11 | – | – | |
| Phobius | 451 | 471 | 21 | – | – | |
| TMHMM | 453 | 475 | 23 | – | – | |
| Phobius | 472 | 476 | 5 | – | – | |
| Phobius | 477 | 501 | 25 | – | – | |
| TMHMM | 480 | 502 | 23 | – | – | |
| Phobius | 502 | 530 | 29 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0281779.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0281779.1, powered by CORGI.
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