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Lj0g3v0285689.1

Overview

Field Value
Gene ID Lj0g3v0285689
Transcript ID Lj0g3v0285689.1
Lotus japonicus genome version MG20 v3.0
Description Beta-galactosidase [Medicago truncatula] gi|357455519|ref|XP_003598040.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF01301
1 209 209 1.60E-63
IPR031330
PANTHER
PTHR23421:SF80
1 531 531 0 –
SUPERFAMILY
SSF51445
1 211 211 3.63E-50
IPR017853
PANTHER
PTHR23421
1 531 531 0
IPR001944
Gene3D
G3DSA:3.20.20.80
2 212 211 6.60E-68
IPR013781
PRINTS
PR00742
41 56 16 9.10E-43
IPR001944
ProSitePatterns
PS01182
43 55 13 –
IPR019801
PRINTS
PR00742
120 135 16 9.10E-43
IPR001944
PRINTS
PR00742
157 172 16 9.10E-43
IPR001944
PRINTS
PR00742
177 193 17 9.10E-43
IPR001944
SUPERFAMILY
SSF49785
274 427 154 2.07E-15
IPR008979
Gene3D
G3DSA:2.60.120.260
308 411 104 9.10E-06
IPR008979
SUPERFAMILY
SSF49785
455 535 81 3.06E-20
IPR008979
PRINTS
PR00742
489 503 15 9.10E-43
IPR001944
Gene3D
G3DSA:2.60.120.260
490 586 97 9.00E-11
IPR008979
PRINTS
PR00742
516 532 17 9.10E-43
IPR001944
PANTHER
PTHR23421
556 678 123 0
IPR001944
PANTHER
PTHR23421:SF80
556 678 123 0 –
SUPERFAMILY
SSF49785
564 603 40 3.06E-20
IPR008979
ProSiteProfiles
PS50228
608 693 86 11.411
IPR000922
Pfam
PF02140
616 692 77 1.60E-13
IPR000922

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0030246
Molecular function Carbohydrate binding Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0285689.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0285689.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.