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Lj0g3v0286639.2

Overview

Field Value
Gene ID Lj0g3v0286639
Transcript ID Lj0g3v0286639.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Peptidyl-prolyl cis-trans isomerase [Medicago truncatula] gi|358345178|ref|XP_003636659.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11071
1 108 108 4.40E-73
IPR024936
PANTHER
PTHR11071:SF156
1 108 108 4.40E-73 –
SUPERFAMILY
SSF54928
29 138 110 1.34E-26
IPR012677
Gene3D
G3DSA:3.30.70.330
33 134 102 5.10E-25
IPR012677
CDD
cd12235
39 121 83 2.30E-60 –
ProSiteProfiles
PS50102
42 120 79 15.664
IPR000504
SMART
SM00360
43 116 74 2.30E-19
IPR000504
Pfam
PF00076
44 114 71 1.80E-14
IPR000504
SUPERFAMILY
SSF57756
128 160 33 1.64E-05
IPR001878
Gene3D
G3DSA:4.10.60.10
135 154 20 3.20E-06
IPR001878
Pfam
PF00098
139 154 16 5.70E-06
IPR001878
SMART
SM00343
139 155 17 6.70E-04
IPR001878
ProSiteProfiles
PS50158
140 153 14 9.554
IPR001878
MobiDBLite
mobidb-lite
184 235 52 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003755
Molecular function Peptidyl-prolyl cis-trans isomerase activity Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj0g3v0286639.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0286639.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.