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Lj0g3v0297599.1

Overview

Field Value
Gene ID Lj0g3v0297599
Transcript ID Lj0g3v0297599.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like [Glycine max] gi|356500419|ref|XP_003519029.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 103 103 – –
PANTHER
PTHR24031
50 72 23 3.80E-134 –
PANTHER
PTHR24031:SF283
50 72 23 3.80E-134 –
Gene3D
G3DSA:3.40.50.300
88 113 26 1.60E-17
IPR027417
Pfam
PF00270
91 343 253 8.20E-11
IPR011545
PANTHER
PTHR24031
238 548 311 3.80E-134 –
PANTHER
PTHR24031:SF283
238 548 311 3.80E-134 –
SUPERFAMILY
SSF52540
238 365 128 4.30E-14
IPR027417
Gene3D
G3DSA:3.40.50.300
239 354 116 1.60E-17
IPR027417

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 114

Expression data

Expression pattern

Expression pattern of Lj0g3v0297599.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0297599.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.