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Lj0g3v0315869.1

Overview

Field Value
Gene ID Lj0g3v0315869
Transcript ID Lj0g3v0315869.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: R-linalool synthase, chloroplastic-like [Glycine max] gi|356543756|ref|XP_003540326.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31225:SF13
39 573 535 0 –
PANTHER
PTHR31225
39 573 535 0 –
CDD
cd00684
39 570 532 0 –
Pfam
PF01397
57 221 165 2.80E-35
IPR001906
SUPERFAMILY
SSF48239
65 245 181 5.96E-48
IPR008930
Gene3D
G3DSA:1.50.30.10
73 261 189 7.50E-54
IPR001906
Coils
Coil
227 247 21 – –
SUPERFAMILY
SSF48576
249 565 317 8.63E-95
IPR008949
SFLD
SFLDG01019
250 570 321 0 –
Pfam
PF03936
252 516 265 7.30E-98
IPR005630
Gene3D
G3DSA:1.10.600.10
262 570 309 3.40E-113
IPR008949
SFLD
SFLDS00005
308 520 213 4.90E-17 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0010333
Molecular function Terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
Subterm of
GO:0016829
Molecular function Lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj0g3v0315869.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0315869.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.