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Lj0g3v0318309.1

Overview

Field	Value
Gene ID	Lj0g3v0318309
Transcript ID	Lj0g3v0318309.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1A-like [Cicer arietinum] gi\|502102707\|ref\|XP_004492159.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12460:SF6 View details on PTHR12460:SF6 Search for proteins/transripts with this domain View external data on PTHR12460:SF6	1	513	513	1.50E-278	–
PANTHER	PTHR12460 View details on PTHR12460 Search for proteins/transripts with this domain View external data on PTHR12460	1	513	513	1.50E-278	–
ProSiteProfiles	PS51391 View details on PS51391 Search for proteins/transripts with this domain View external data on PS51391	2	134	133	42.506	IPR006569 Show description in modal box View details on IPR006569 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd03562 View details on cd03562 Search for proteins/transripts with this domain View external data on cd03562	5	120	116	6.90E-35	–
SUPERFAMILY	SSF48464 View details on SSF48464 Search for proteins/transripts with this domain View external data on SSF48464	8	117	110	1.31E-16	IPR008942 Show description in modal box View details on IPR008942 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00582 View details on SM00582 Search for proteins/transripts with this domain View external data on SM00582	9	130	122	2.50E-43	IPR006569 Show description in modal box View details on IPR006569 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.25.40.90 View details on G3DSA:1.25.40.90 Search for proteins/transripts with this domain View external data on G3DSA:1.25.40.90	13	120	108	8.80E-12	IPR008942 Show description in modal box View details on IPR008942 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04818 View details on PF04818 Search for proteins/transripts with this domain View external data on PF04818	57	118	62	7.40E-19	IPR006903 Show description in modal box View details on IPR006903 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	372	442	71	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	493	513	21	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj0g3v0318309.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0318309.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.