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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006569
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 44 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.015s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0230499.1
n.a. PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Vitis vinifera] gi|225438617|ref|XP_002276726.1| chr0 119376374 119380550 -
3 domain predictions
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Lj0g3v0230499.2
n.a. PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Vitis vinifera] gi|225438617|ref|XP_002276726.1| chr0 119376374 119380550 -
3 domain predictions
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Lj0g3v0304019.1
n.a. PREDICTED: HUA2-like protein 3-like [Cicer arietinum] gi|502109744|ref|XP_004493717.1| chr0 158365566 158374738 -
3 domain predictions
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Lj0g3v0310439.1
n.a. Calcium homeostasis endoplasmic reticulum protein [Medicago truncatula] gi|357442977|ref|XP_003591766.1| chr0 162119560 162123311 +
2 domain predictions
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Lj0g3v0318309.1
n.a. PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1A-like [Cicer arietinum] gi|502102707|ref|XP_004492159.1| chr0 166225515 166235936 +
3 domain predictions
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Lj1g3v0052580.1
n.a. PREDICTED: polyadenylation and cleavage factor homolog 11-like [Cicer arietinum] gi|502090897|ref|XP_004489376.1| chr1 543982 557000 -
3 domain predictions
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Lj1g3v0052580.2
n.a. PREDICTED: polyadenylation and cleavage factor homolog 11-like [Cicer arietinum] gi|502090897|ref|XP_004489376.1| chr1 550056 557000 -
3 domain predictions
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Lj1g3v0052580.3
n.a. PREDICTED: polyadenylation and cleavage factor homolog 11-like [Cicer arietinum] gi|502090897|ref|XP_004489376.1| chr1 550056 557000 -
3 domain predictions
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Lj1g3v3891890.1
n.a. PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1A-like [Cicer arietinum] gi|502102707|ref|XP_004492159.1| chr1 44669372 44679678 -
3 domain predictions
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Lj1g3v4696550.2
n.a. Pre-mRNA cleavage complex 2 protein Pcf11 [Medicago truncatula] gi|357510921|ref|XP_003625749.1| chr1 55964514 55970311 +
3 domain predictions
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Lj1g3v4763860.1
n.a. Calcium homeostasis endoplasmic reticulum protein [Medicago truncatula] gi|357442977|ref|XP_003591766.1| chr1 57179089 57183059 +
3 domain predictions
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Lj3g3v3513720.1
n.a. PREDICTED: ENHANCER OF AG-4 protein 2-like, partial [Cicer arietinum] gi|502144948|ref|XP_004505806.1| chr3 42837096 42853589 -
3 domain predictions
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Lj3g3v3523870.1
n.a. PREDICTED: ENHANCER OF AG-4 protein 2-like, partial [Cicer arietinum] gi|502144948|ref|XP_004505806.1| chr3 42916648 42932803 -
3 domain predictions
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Lj3g3v3523870.2
n.a. PREDICTED: ENHANCER OF AG-4 protein 2-like, partial [Cicer arietinum] gi|502144948|ref|XP_004505806.1| chr3 42925852 42932803 -
3 domain predictions
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Lj4g3v1073530.1
n.a. PREDICTED: U2 snRNP-associated SURP motif-containing protein-like isoform X1 [Cicer arietinum] gi|502154212|ref|XP_004509622.1| chr4 15361039 15382082 +
3 domain predictions
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Lj4g3v1073530.2
n.a. PREDICTED: U2 snRNP-associated SURP motif-containing protein-like isoform X1 [Cicer arietinum] gi|502154212|ref|XP_004509622.1| chr4 15374571 15382082 +
3 domain predictions
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Lj4g3v2802770.1
n.a. PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Vitis vinifera] gi|225438617|ref|XP_002276726.1| chr4 37498482 37502626 -
3 domain predictions
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Lj5g3v0087390.1
n.a. Pre-mRNA cleavage complex 2 protein Pcf11 [Medicago truncatula] gi|357510921|ref|XP_003625749.1| chr5 641971 642615 +
2 domain predictions
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Lj5g3v0962480.1
n.a. PREDICTED: HUA2-like protein 3-like isoform X1 [Cicer arietinum] gi|502115541|ref|XP_004495229.1| chr5 14619907 14636657 +
3 domain predictions
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LotjaGi1g1v0628600.1
n.a. Regulation of nuclear pre-mRNA domain-containing protein 1B; TAIR: AT3G26990.1 ENTH/VHS family protein; Swiss-Prot: sp|Q9NQG5|RPR1B_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1B; TrEMBL-Plants: tr|G7L125|G7L125_MEDTR Regulation of nuclear pre-mRNA domain protein; Found in the gene: LotjaGi1g1v0628600 LjG1.1_chr1 117899379 117911524 -
3 domain predictions
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LotjaGi1g1v0652000.1
n.a. Regulation of nuclear pre-mRNA domain-containing protein 1B; TAIR: AT3G26990.1 ENTH/VHS family protein; Swiss-Prot: sp|Q9NQG5|RPR1B_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1B; TrEMBL-Plants: tr|K7KBY0|K7KBY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0652000 LjG1.1_chr1 121130882 121147368 -
3 domain predictions
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LotjaGi1g1v0679800.1
n.a. Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT2G36480.1 pre-mRNA cleavage complex 2 Pcf11-like protein; Swiss-Prot: sp|Q0WPF2|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr|A0A072U4Q6|A0A072U4Q6_MEDTR ENTH/VHS-like protein; Found in the gene: LotjaGi1g1v0679800 LjG1.1_chr1 124687468 124711985 -
3 domain predictions
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LotjaGi1g1v0729800.1
n.a. Tudor/PWWP/MBT domain-containing protein; TAIR: AT3G63070.1 Tudor/PWWP/MBT domain-containing protein; Swiss-Prot: sp|F4IZM8|HUAL3_ARATH Protein HUA2-LIKE 3; TrEMBL-Plants: tr|I1JNS1|I1JNS1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0729800 LjG1.1_chr1 130149151 130159204 -
3 domain predictions
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LotjaGi1g1v0729800.2
n.a. Tudor/PWWP/MBT domain-containing protein; TAIR: AT3G63070.1 Tudor/PWWP/MBT domain-containing protein; Swiss-Prot: sp|F4IZM8|HUAL3_ARATH Protein HUA2-LIKE 3; TrEMBL-Plants: tr|I1JNS1|I1JNS1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0729800 LjG1.1_chr1 130149151 130159204 -
3 domain predictions
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LotjaGi1g1v0729800.3
n.a. Tudor/PWWP/MBT domain-containing protein; TAIR: AT3G63070.1 Tudor/PWWP/MBT domain-containing protein; Swiss-Prot: sp|F4IZM8|HUAL3_ARATH Protein HUA2-LIKE 3; TrEMBL-Plants: tr|I1JNS1|I1JNS1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0729800 LjG1.1_chr1 130149179 130159193 -
3 domain predictions
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LotjaGi1g1v0742800.1
n.a. Calcium homeostasis endoplasmic reticulum protein; TAIR: AT4G31200.1 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; Swiss-Prot: sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein; TrEMBL-Plants: tr|A0A1J7HFJ7|A0A1J7HFJ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0742800 LjG1.1_chr1 131644814 131649577 +
3 domain predictions
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LotjaGi1g1v0742800.2
n.a. Calcium homeostasis endoplasmic reticulum protein; TAIR: AT4G31200.1 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; Swiss-Prot: sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein; TrEMBL-Plants: tr|A0A1J7HFJ7|A0A1J7HFJ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0742800 LjG1.1_chr1 131645244 131648566 +
3 domain predictions
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LotjaGi2g1v0457600.1
n.a. Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp|Q0WPF2|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr|A0A1J7HJ63|A0A1J7HJ63_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457600 LjG1.1_chr2 95119492 95126723 +
3 domain predictions
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LotjaGi2g1v0457600.2
n.a. Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp|Q0WPF2|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr|A0A1J7HJ63|A0A1J7HJ63_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457600 LjG1.1_chr2 95119492 95127120 +
3 domain predictions
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LotjaGi2g1v0457600.3
n.a. Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp|Q0WPF2|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr|A0A1J7HJ63|A0A1J7HJ63_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457600 LjG1.1_chr2 95119492 95132581 +
3 domain predictions
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LotjaGi2g1v0457600.4
n.a. Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp|Q0WPF2|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr|A0A1J7HJ63|A0A1J7HJ63_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457600 LjG1.1_chr2 95119492 95132581 +
3 domain predictions
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LotjaGi2g1v0457600.5
n.a. Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp|Q0WPF2|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr|A0A1J7HJ63|A0A1J7HJ63_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457600 LjG1.1_chr2 95119492 95132581 +
3 domain predictions
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LotjaGi2g1v0457600.6
n.a. Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp|Q0WPF2|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr|A0A1J7HJ63|A0A1J7HJ63_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457600 LjG1.1_chr2 95119514 95131924 +
3 domain predictions
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LotjaGi3g1v0528900_LC.1
n.a. Hepatoma-derived growth factor-related protein 2; TAIR: AT5G23150.2 Tudor/PWWP/MBT domain-containing protein; Swiss-Prot: sp|Q9XER9|HUA2_ARATH ENHANCER OF AG-4 protein 2; TrEMBL-Plants: tr|A0A151TMW5|A0A151TMW5_CAJCA Hepatoma-derived growth factor-related protein 2; Found in the gene: LotjaGi3g1v0528900_LC LjG1.1_chr3 94554073 94570781 -
3 domain predictions
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LotjaGi3g1v0528900_LC.2
n.a. Tudor/PWWP/MBT domain-containing protein, putative isoform 2; TAIR: AT5G23150.1 Tudor/PWWP/MBT domain-containing protein; Swiss-Prot: sp|Q9XER9|HUA2_ARATH ENHANCER OF AG-4 protein 2; TrEMBL-Plants: tr|A0A0R0HDU9|A0A0R0HDU9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0528900_LC LjG1.1_chr3 94561140 94570569 -
3 domain predictions
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LotjaGi4g1v0148600.1
n.a. U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600 LjG1.1_chr4 24206377 24228679 +
3 domain predictions
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LotjaGi4g1v0148600.2
n.a. U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600 LjG1.1_chr4 24206915 24227848 +
3 domain predictions
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LotjaGi4g1v0148600.3
n.a. U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600 LjG1.1_chr4 24207213 24227741 +
3 domain predictions
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LotjaGi4g1v0148600.4
n.a. U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600 LjG1.1_chr4 24220199 24227848 +
3 domain predictions
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LotjaGi4g1v0401200.1
n.a. Regulation of nuclear pre-mRNA domain-containing protein 1B; TAIR: AT5G65180.1 ENTH/VHS family protein; Swiss-Prot: sp|Q9NQG5|RPR1B_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1B; TrEMBL-Plants: tr|A0A151RRS1|A0A151RRS1_CAJCA Regulation of nuclear pre-mRNA domain-containing protein 1B; Found in the gene: LotjaGi4g1v0401200 LjG1.1_chr4 77870269 77875028 +
3 domain predictions
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LotjaGi5g1v0091600.1
n.a. Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT2G36480.1 pre-mRNA cleavage complex 2 Pcf11-like protein; Swiss-Prot: sp|Q0WPF2|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr|K7LHS7|K7LHS7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0091600 LjG1.1_chr5 15998347 16006000 +
3 domain predictions
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LotjaGi5g1v0091600.2
n.a. Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT2G36480.1 pre-mRNA cleavage complex 2 Pcf11-like protein; Swiss-Prot: sp|Q0WPF2|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr|K7LHS7|K7LHS7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0091600 LjG1.1_chr5 15998347 16006000 +
3 domain predictions
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LotjaGi5g1v0163800.1
n.a. Tudor/PWWP/MBT domain-containing protein; TAIR: AT3G63070.1 Tudor/PWWP/MBT domain-containing protein; Swiss-Prot: sp|F4IZM8|HUAL3_ARATH Protein HUA2-LIKE 3; TrEMBL-Plants: tr|I1JFC3|I1JFC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163800 LjG1.1_chr5 41957601 41974293 +
3 domain predictions
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LotjaGi6g1v0084800.1
n.a. Regulation of nuclear pre-mRNA domain-containing protein 1B; TAIR: AT5G10060.1 ENTH/VHS family protein; Swiss-Prot: sp|Q9NQG5|RPR1B_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1B; TrEMBL-Plants: tr|K7LRU4|K7LRU4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0084800 LjG1.1_chr6 16842826 16849306 -
3 domain predictions
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