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Lj0g3v0330349.1

Overview

Field Value
Gene ID Lj0g3v0330349
Transcript ID Lj0g3v0330349.1
Lotus japonicus genome version MG20 v3.0
Description Cation proton exchanger [Medicago truncatula] gi|357461421|ref|XP_003600992.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 20 20
PANTHER 1 154 154 3.40E-73
PANTHER 1 154 154 3.40E-73
Pfam 8 153 146 3.20E-18
TMHMM 20 42 23
Phobius 21 52 32
Phobius 53 71 19
Phobius 72 90 19
Phobius 91 101 11
TMHMM 97 119 23
Phobius 102 123 22
Phobius 124 128 5
Phobius 129 147 19
Phobius 148 165 18

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Cation transport The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Molecular function Solute:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out).
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0330349.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0330349.1, powered by CORGI.

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