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Lj0g3v0337679.1

Overview

Field Value
Gene ID Lj0g3v0337679
Transcript ID Lj0g3v0337679.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Os06g0601000 [Oryza sativa Japonica Group] gi|115468806|ref|NP_001058002.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 19 19 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 2 2 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
3 14 12 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
15 19 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
20 327 308 – –
MobiDBLite
mobidb-lite
116 159 44 – –
PANTHER
PTHR15467
159 324 166 2.90E-37 –
SMART
SM00389
251 316 66 8.10E-04
IPR001356
ProSiteProfiles
PS50071
252 312 61 9.329
IPR001356
Gene3D
G3DSA:1.10.10.60
253 307 55 1.00E-06
IPR009057
SUPERFAMILY
SSF46689
254 315 62 4.28E-08
IPR009057
CDD
cd00086
255 307 53 1.71E-05 –
Pfam
PF00046
261 307 47 4.50E-06
IPR001356

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj0g3v0337679.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0337679.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.