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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0340219 |
| Transcript ID | Lj0g3v0340219.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: rhomboid protein 2-like [Cicer arietinum] gi|502148973|ref|XP_004507343.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 261 | 261 | 3.20E-96 | – | |
| PANTHER | 1 | 261 | 261 | 3.20E-96 | – | |
| Phobius | 1 | 11 | 11 | – | – | |
| TMHMM | 5 | 27 | 23 | – | – | |
| Phobius | 12 | 29 | 18 | – | – | |
| Gene3D | 13 | 199 | 187 | 2.50E-19 | ||
| SUPERFAMILY | 13 | 199 | 187 | 4.45E-23 | – | |
| Phobius | 30 | 57 | 28 | – | – | |
| Pfam | 48 | 201 | 154 | 2.50E-25 | ||
| TMHMM | 57 | 79 | 23 | – | – | |
| Phobius | 58 | 80 | 23 | – | – | |
| Phobius | 81 | 91 | 11 | – | – | |
| Phobius | 92 | 116 | 25 | – | – | |
| TMHMM | 94 | 116 | 23 | – | – | |
| Phobius | 117 | 122 | 6 | – | – | |
| TMHMM | 123 | 145 | 23 | – | – | |
| Phobius | 123 | 142 | 20 | – | – | |
| Phobius | 143 | 153 | 11 | – | – | |
| Phobius | 154 | 175 | 22 | – | – | |
| TMHMM | 155 | 177 | 23 | – | – | |
| Phobius | 176 | 181 | 6 | – | – | |
| Phobius | 182 | 200 | 19 | – | – | |
| TMHMM | 182 | 201 | 20 | – | – | |
| Phobius | 201 | 205 | 5 | – | – | |
| TMHMM | 206 | 223 | 18 | – | – | |
| Phobius | 206 | 223 | 18 | – | – | |
| Phobius | 224 | 271 | 48 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj0g3v0340219.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0340219.1, powered by CORGI.
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