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Rhomboid family
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: inactive rhomboid protein 1-like [Glycine max] gi|356504274|ref|XP_003520922.1| | 11 | ||
| – | PREDICTED: inactive rhomboid protein 1-like [Cicer arietinum] gi|502175388|ref|XP_004515720.1| | 11 | ||
| – | PREDICTED: inactive rhomboid protein 1-like [Glycine max] gi|356557429|ref|XP_003547018.1| | 12 | ||
| – | RHOMBOID-like protein 14 isoform 1 [Theobroma cacao] gi|508725064|gb|EOY16961.1| | 15 | ||
| – | PREDICTED: rhomboid protease GluP-like [Solanum lycopersicum] gi|460373127|ref|XP_004232374.1| | 11 | ||
| – | Rhomboid family protein (ISS) [Medicago truncatula] gi|357436521|ref|XP_003588536.1| | 11 | ||
| – | Rhomboid family protein [Arabidopsis lyrata subsp]. lyrata] gi|297812787|ref|XP_002874277.1| | 11 | ||
| – | PREDICTED: rhomboid protein 2-like [Cicer arietinum] gi|502148973|ref|XP_004507343.1| | 10 | ||
| – | PREDICTED: rhomboid protein 1, mitochondrial [Vitis vinifera] gi|225456573|ref|XP_002265768.1| | 12 | ||
| – | Ubiquitin-associated domain-containing protein [Medicago truncatula] gi|357509361|ref|XP_003624969.1| | 16 | ||
| – | RHOMBOID-like protein 15 [Theobroma cacao] gi|508717744|gb|EOY09641.1| | 19 | ||
| – | PREDICTED: rhomboid protein 1, mitochondrial [Vitis vinifera] gi|225456573|ref|XP_002265768.1| | 11 | ||
| – | PREDICTED: inactive rhomboid protein 1-like isoform 1 [Glycine max] gi|356575933|ref|XP_003556090.1| | 12 | ||
| – | Rhomboid protease gluP [Medicago truncatula] gi|357452411|ref|XP_003596482.1| | 11 | ||
| – | Rhomboid family protein; TAIR: AT5G25640.1 Rhomboid-related intramembrane serine protease family protein; Swiss-Prot: sp|Q84MB5|RBL11_ARATH Rhomboid-like protein 11, chloroplastic; TrEMBL-Plants: tr|I3SJI6|I3SJI6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0223800 | 11 | ||
| – | Rhomboid-like protein; TAIR: AT1G77860.2 Rhomboid-related intramembrane serine protease family protein; Swiss-Prot: sp|F4I8K2|RBL8_ARATH RHOMBOID-like protein 8; TrEMBL-Plants: tr|A0A1J7GBZ3|A0A1J7GBZ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0248700 | 13 | ||
| – | Rhomboid-like protein; TAIR: AT2G29050.1 RHOMBOID-like 1; Swiss-Prot: sp|Q0WQX7|RBL1_ARATH RHOMBOID-like protein 1; TrEMBL-Plants: tr|K7M3E7|K7M3E7_SOYBN Rhomboid-like protein; Found in the gene: LotjaGi1g1v0576100 | 13 | ||
| – | Rhomboid-like protein; TAIR: AT2G29050.1 RHOMBOID-like 1; Swiss-Prot: sp|Q0WQX7|RBL1_ARATH RHOMBOID-like protein 1; TrEMBL-Plants: tr|A0A151SUQ7|A0A151SUQ7_CAJCA Rhomboid-like protein; Found in the gene: LotjaGi1g1v0576100 | 12 | ||
| – | Ubiquitin-associated domain-containing protein 2; TAIR: AT3G56740.1 Ubiquitin-associated (UBA) protein; Swiss-Prot: sp|Q9LET3|RBL20_ARATH Rhomboid-like protein 20; TrEMBL-Plants: tr|Q2HSZ5|Q2HSZ5_MEDTR UBA-like; Found in the gene: LotjaGi1g1v0662300 | 7 | ||
| – | Ubiquitin-associated domain-containing protein 2; TAIR: AT3G56740.1 Ubiquitin-associated (UBA) protein; Swiss-Prot: sp|Q9LET3|RBL20_ARATH Rhomboid-like protein 20; TrEMBL-Plants: tr|G7KQP7|G7KQP7_MEDTR Ubiquitin-associated/TS-N domain protein; Found in the gene: LotjaGi1g1v0662300 | 14 | ||
| – | Rhomboid family protein; TAIR: AT3G58460.1 RHOMBOID-like protein 15; Swiss-Prot: sp|Q8LB17|RBL15_ARATH Rhomboid-like protein 15; TrEMBL-Plants: tr|A0A151TVU8|A0A151TVU8_CAJCA Uncharacterized protein family; Found in the gene: LotjaGi1g1v0742500 | 20 | ||
| – | Rhomboid family protein; TAIR: AT5G38510.1 Rhomboid-related intramembrane serine protease family protein; Swiss-Prot: sp|Q9FFX0|RBL9_ARATH RHOMBOID-like protein 9, chloroplastic; TrEMBL-Plants: tr|A0A0B2SRZ4|A0A0B2SRZ4_GLYSO Rhomboid protease gluP; Found in the gene: LotjaGi2g1v0053900 | 11 | ||
| – | Rhomboid family protein; TAIR: AT5G38510.1 Rhomboid-related intramembrane serine protease family protein; Swiss-Prot: sp|Q9FFX0|RBL9_ARATH RHOMBOID-like protein 9, chloroplastic; TrEMBL-Plants: tr|A0A0B2SRZ4|A0A0B2SRZ4_GLYSO Rhomboid protease gluP; Found in the gene: LotjaGi2g1v0053900 | 11 | ||
| – | Rhomboid-like protein; TAIR: AT1G63120.1 RHOMBOID-like 2; Swiss-Prot: sp|Q9CAN1|RBL2_ARATH RHOMBOID-like protein 2; TrEMBL-Plants: tr|A0A151U6I6|A0A151U6I6_CAJCA Rhomboid-like protein; Found in the gene: LotjaGi2g1v0147200 | 12 | ||
| – | Rhomboid-like protein; TAIR: AT1G52580.1 RHOMBOID-like protein 5; Swiss-Prot: sp|Q9SSR0|RBL5_ARATH RHOMBOID-like protein 5; TrEMBL-Plants: tr|A0A151SXT1|A0A151SXT1_CAJCA Putative polygalacturonase family; Found in the gene: LotjaGi3g1v0009700 | 12 | ||
| – | Rhomboid-like protein; TAIR: AT2G29050.1 RHOMBOID-like 1; Swiss-Prot: sp|Q0WQX7|RBL1_ARATH RHOMBOID-like protein 1; TrEMBL-Plants: tr|I1JLP8|I1JLP8_SOYBN Rhomboid-like protein; Found in the gene: LotjaGi3g1v0225800 | 12 | ||
| – | Rhomboid protein; TAIR: AT3G59520.1 RHOMBOID-like protein 13; Swiss-Prot: sp|Q9M1B5|RBL13_ARATH RHOMBOID-like protein 13; TrEMBL-Plants: tr|I3T833|I3T833_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0499900 | 11 | ||
| – | Rhomboid family protein; TAIR: AT3G59520.1 RHOMBOID-like protein 13; Swiss-Prot: sp|Q9M1B5|RBL13_ARATH RHOMBOID-like protein 13; TrEMBL-Plants: tr|I3T833|I3T833_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0499900 | 11 | ||
| – | Rhomboid family protein; TAIR: AT1G25290.1 RHOMBOID-like protein 10; Swiss-Prot: sp|F4ICF4|RBL10_ARATH RHOMBOID-like protein 10, chloroplastic; TrEMBL-Plants: tr|I3SAN0|I3SAN0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0227300_LC | 11 | ||
| – | Rhomboid family protein; TAIR: AT1G25290.2 RHOMBOID-like protein 10; Swiss-Prot: sp|F4ICF4|RBL10_ARATH RHOMBOID-like protein 10, chloroplastic; TrEMBL-Plants: tr|I3SAN0|I3SAN0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0227300_LC | 11 | ||
| – | Rhomboid family protein; TAIR: AT1G18600.1 RHOMBOID-like protein 12; Swiss-Prot: sp|Q9FZ81|RBL12_ARATH RHOMBOID-like protein 12, mitochondrial; TrEMBL-Plants: tr|A0A072V1P2|A0A072V1P2_MEDTR S54 family peptidase; Found in the gene: LotjaGi4g1v0255900 | 11 | ||
| – | Rhomboid-like protein; TAIR: AT1G63120.1 RHOMBOID-like 2; Swiss-Prot: sp|Q9CAN1|RBL2_ARATH RHOMBOID-like protein 2; TrEMBL-Plants: tr|V7BC17|V7BC17_PHAVU Rhomboid-like protein; Found in the gene: LotjaGi5g1v0303600 | 13 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 3.13 |