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Lj0g3v0346859.1

Overview

Field Value
Gene ID Lj0g3v0346859
Transcript ID Lj0g3v0346859.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera] gi|359475946|ref|XP_002278933.2|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10593
1 376 376 9.50E-169 –
MobiDBLite
mobidb-lite
1 65 65 – –
PANTHER
PTHR10593:SF25
1 376 376 9.50E-169 –
Gene3D
G3DSA:3.30.160.60
79 102 24 2.30E-05
IPR013087
SUPERFAMILY
SSF57667
79 102 24 1.36E-07 –
Pfam
PF12171
80 102 23 6.80E-05
IPR022755
SMART
SM00355
80 102 23 0.012
IPR015880
ProSiteProfiles
PS50157
80 102 23 10.928
IPR007087
ProSitePatterns
PS00028
82 102 21 –
IPR007087
SMART
SM00355
122 152 31 97
IPR015880
Gene3D
G3DSA:3.30.160.60
145 177 33 1.80E-04
IPR013087
SUPERFAMILY
SSF57667
152 177 26 1.36E-07 –
SMART
SM00355
157 177 21 130
IPR015880
PANTHER
PTHR10593:SF25
418 505 88 9.50E-169 –
PANTHER
PTHR10593
418 505 88 9.50E-169 –
MobiDBLite
mobidb-lite
466 485 20 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj0g3v0346859.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0346859.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.