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Lj0g3v0360559.1

Overview

Field Value
Gene ID Lj0g3v0360559
Transcript ID Lj0g3v0360559.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Glycine max] gi|356567603|ref|XP_003552007.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10352
1 281 281 4.10E-151
IPR017334
PIRSF
PIRSF037949
2 281 280 1.90E-88
IPR017334
Hamap
MF_03006
9 280 272 27.989
IPR017334
Pfam
PF12353
23 146 124 2.70E-34
IPR024675
CDD
cd12933
30 145 116 1.23E-34
IPR024675
SUPERFAMILY
SSF54928
152 276 125 4.84E-28
IPR012677
MobiDBLite
mobidb-lite
155 199 45 – –
Gene3D
G3DSA:3.30.70.330
185 279 95 2.60E-26
IPR012677
ProSiteProfiles
PS50102
200 278 79 18.786
IPR000504
SMART
SM00360
201 274 74 4.80E-24
IPR000504
CDD
cd12408
201 276 76 1.34E-44 –
Pfam
PF00076
202 268 67 1.00E-19
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0005852
Cellular component Eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj0g3v0360559.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0360559.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.