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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0363599 |
| Transcript ID | Lj0g3v0363599.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | zinc finger CCCH domain-containing protein [Arabidopsis thaliana] gi|334182742|ref|NP_173577.2| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 79 | 79 | – | – | |
| SMART | 123 | 169 | 47 | 2.20E-17 | ||
| ProSiteProfiles | 125 | 171 | 47 | 15.468 | ||
| Pfam | 125 | 169 | 45 | 3.10E-15 | ||
| MobiDBLite | 166 | 209 | 44 | – | – | |
| SMART | 214 | 260 | 47 | 8.30E-13 | ||
| Pfam | 216 | 259 | 44 | 5.50E-14 | ||
| ProSiteProfiles | 216 | 262 | 47 | 13.981 | ||
| PANTHER | 266 | 1143 | 878 | 3.10E-255 | – | |
| PANTHER | 266 | 1143 | 878 | 3.10E-255 | – | |
| MobiDBLite | 400 | 445 | 46 | – | – | |
| MobiDBLite | 473 | 583 | 111 | – | – | |
| Coils | 794 | 814 | 21 | – | – | |
| ProSiteProfiles | 916 | 945 | 30 | 13.601 | ||
| SMART | 916 | 944 | 29 | 0.016 | ||
| SMART | 945 | 969 | 25 | 6.7 | ||
| SMART | 971 | 996 | 26 | 0.84 | ||
| ProSiteProfiles | 971 | 997 | 27 | 10.887 | ||
| ProSiteProfiles | 998 | 1025 | 28 | 10.699 | ||
| SMART | 998 | 1024 | 27 | 0.36 | ||
| SMART | 1025 | 1047 | 23 | 1.2 | ||
| ProSiteProfiles | 1026 | 1048 | 23 | 7.423 | ||
| MobiDBLite | 1046 | 1069 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj0g3v0363599.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0363599.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.