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Field | Value |
---|---|
Gene ID | Lj1g3v0047810 |
Transcript ID | Lj1g3v0047810.1 |
Lotus japonicus genome version | MG20 v3.0 |
Description | PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Glycine max] gi|356495831|ref|XP_003516775.1| |
Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 49 | 70 | 22 | 1.10E-155 | – | |
PANTHER | 49 | 70 | 22 | 1.10E-155 | – | |
SUPERFAMILY | 135 | 344 | 210 | 7.68E-43 | ||
PANTHER | 139 | 348 | 210 | 1.10E-155 | – | |
PANTHER | 139 | 348 | 210 | 1.10E-155 | – | |
Pfam | 147 | 316 | 170 | 1.20E-24 | ||
CDD | 147 | 385 | 239 | 2.43E-48 | – | |
PANTHER | 364 | 428 | 65 | 1.10E-155 | – | |
PANTHER | 364 | 428 | 65 | 1.10E-155 | – | |
SUPERFAMILY | 376 | 387 | 12 | 7.68E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of Lj1g3v0047810.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0047810.1, powered by CORGI.
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