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Lj1g3v0130110.2

Overview

Field	Value
Gene ID	Lj1g3v0130110
Transcript ID	Lj1g3v0130110.2
Related isoforms 2	Lj1g3v0130110.1 Lj1g3v0130110.3
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: N-alpha-acetyltransferase 60-like [Glycine max] gi\|356538503\|ref\|XP_003537743.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR14744 View details on PTHR14744 Search for proteins/transripts with this domain View external data on PTHR14744	1	244	244	3.40E-112	–
PANTHER	PTHR14744:SF15 View details on PTHR14744:SF15 Search for proteins/transripts with this domain View external data on PTHR14744:SF15	1	244	244	3.40E-112	–
Gene3D	G3DSA:3.40.630.30 View details on G3DSA:3.40.630.30 Search for proteins/transripts with this domain View external data on G3DSA:3.40.630.30	10	182	173	5.30E-34	IPR016181 Show description in modal box View details on IPR016181 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF55729 View details on SSF55729 Search for proteins/transripts with this domain View external data on SSF55729	11	183	173	1.86E-23	IPR016181 Show description in modal box View details on IPR016181 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51186 View details on PS51186 Search for proteins/transripts with this domain View external data on PS51186	12	184	173	16.725	IPR000182 Show description in modal box View details on IPR000182 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00583 View details on PF00583 Search for proteins/transripts with this domain View external data on PF00583	67	158	92	1.40E-11	IPR000182 Show description in modal box View details on IPR000182 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd04301 View details on cd04301 Search for proteins/transripts with this domain View external data on cd04301	77	141	65	6.47E-06	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008080 View details of GO:0008080 AmiGO InterPro QuickGO	Molecular function	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.	Subterm of View details of GO:0016407 View details of GO:0016410

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v0130110.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0130110.2, powered by CORGI.

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