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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000182
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 112 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.584s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001809.1
n.a. N-acetyltransferase 9-like protein [Medicago truncatula] gi|357462591|ref|XP_003601577.1| chr0 509834 513969 -
2 domain predictions
1 GO term
Lj0g3v0081209.1
n.a. Acyl-CoA N-acyltransferases superfamily protein [Theobroma cacao] gi|508787288|gb|EOY34544.1| chr0 31675347 31676766 -
3 domain predictions
1 GO term
Lj0g3v0100699.1
n.a. PHD finger family protein [Arabidopsis lyrata subsp]. lyrata] gi|297801176|ref|XP_002868472.1| chr0 42586261 42594667 -
2 domain predictions
1 GO term
Lj0g3v0121149.1
n.a. Acyl-CoA N-acyltransferases (NAT) superfamily protein [Theobroma cacao] gi|508699759|gb|EOX91655.1| chr0 53965892 53968228 -
3 domain predictions
1 GO term
Lj0g3v0191649.1
n.a. Os03g0747600 [Oryza sativa Japonica Group] gi|297601684|ref|NP_001051260.2| chr0 93677552 93686119 +
2 domain predictions
1 GO term
Lj0g3v0191649.2
n.a. Os03g0747600 [Oryza sativa Japonica Group] gi|297601684|ref|NP_001051260.2| chr0 93677552 93686119 +
2 domain predictions
1 GO term
Lj0g3v0262259.2
n.a. DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297843332|ref|XP_002889547.1| chr0 135913786 135920756 -
2 domain predictions
1 GO term
Lj0g3v0274749.1
n.a. N-acetyltransferase 9-like protein [Medicago truncatula] gi|357462591|ref|XP_003601577.1| chr0 142452036 142455942 +
2 domain predictions
1 GO term
Lj0g3v0285609.1
n.a. PREDICTED: elongator complex protein 3-like [Glycine max] gi|356508774|ref|XP_003523129.1| chr0 148259759 148264978 +
3 domain predictions
1 GO term
Lj0g3v0311459.1
n.a. Acyl-CoA N-acyltransferases -like protein [Arabidopsis thaliana] gi|15218861|ref|NP_171861.1| chr0 162635599 162636483 +
3 domain predictions
1 GO term
Lj0g3v0320839.1
n.a. PREDICTED: N-alpha-acetyltransferase 20 [Vitis vinifera] gi|225437024|ref|XP_002278246.1| chr0 167433084 167437109 +
3 domain predictions
1 GO term
Lj1g3v0098410.1
n.a. Acyl-CoA N-acyltransferases superfamily protein isoform 1 [Theobroma cacao] gi|508713827|gb|EOY05724.1| chr1 915727 917101 -
3 domain predictions
1 GO term
Lj1g3v0098420.1
n.a. Acyl-CoA N-acyltransferases superfamily protein isoform 1 [Theobroma cacao] gi|508713827|gb|EOY05724.1| chr1 918615 919671 -
3 domain predictions
1 GO term
Lj1g3v0130110.1
n.a. PREDICTED: N-alpha-acetyltransferase 60-like [Glycine max] gi|356538503|ref|XP_003537743.1| chr1 1683376 1685953 +
3 domain predictions
1 GO term
Lj1g3v0130110.2
n.a. PREDICTED: N-alpha-acetyltransferase 60-like [Glycine max] gi|356538503|ref|XP_003537743.1| chr1 1683376 1685953 +
3 domain predictions
1 GO term
Lj1g3v0948650.1
n.a. N-acetyltransferase NAT13 [Medicago truncatula] gi|357495591|ref|XP_003618084.1| chr1 11937768 11942068 +
3 domain predictions
1 GO term
Lj1g3v1112820.3
n.a. GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] gi|18415415|ref|NP_567592.1| chr1 13908561 13910745 +
3 domain predictions
1 GO term
Lj1g3v2536100.1
n.a. PREDICTED: LOW QUALITY PROTEIN: acetyltransferase NSI-like [Glycine max] gi|356532133|ref|XP_003534628.1| chr1 29185129 29189452 +
3 domain predictions
1 GO term
Lj1g3v3904440.1
n.a. PREDICTED: N-alpha-acetyltransferase 30-like [Glycine max] gi|356568895|ref|XP_003552643.1| chr1 45501504 45504395 -
3 domain predictions
1 GO term
Lj1g3v4225550.1
n.a. GCN5-related N-acetyltransferase; BRCT [Medicago truncatula] gi|87241454|gb|ABD33312.1| chr1 49757297 49764459 +
2 domain predictions
1 GO term
Lj1g3v4225550.2
n.a. GCN5-related N-acetyltransferase; BRCT [Medicago truncatula] gi|87241454|gb|ABD33312.1| chr1 49757297 49764459 +
2 domain predictions
1 GO term
Lj1g3v4450300.1
n.a. PREDICTED: histone acetyltransferase GCN5-like [Cicer arietinum] gi|502109822|ref|XP_004493735.1| chr1 52153115 52160779 +
3 domain predictions
1 GO term
Lj1g3v4717300.1
n.a. Glucosamine 6-phosphate N-acetyltransferase [Medicago truncatula] gi|357511067|ref|XP_003625822.1| chr1 56248777 56249529 +
3 domain predictions
1 GO term
Lj1g3v4753330.1
n.a. PREDICTED: glucosamine 6-phosphate N-acetyltransferase-like [Cicer arietinum] gi|502111844|ref|XP_004494182.1| chr1 57022841 57024069 -
3 domain predictions
1 GO term
Lj1g3v4955500.1
n.a. GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] gi|15228792|ref|NP_188895.1| chr1 60387918 60389952 +
3 domain predictions
1 GO term
Lj2g3v0635690.2
n.a. PREDICTED: N-alpha-acetyltransferase 40-like isoform X1 [Cicer arietinum] gi|502183908|ref|XP_004517242.1| chr2 9846883 9850397 +
2 domain predictions
1 GO term
Lj2g3v1378720.1
n.a. Acyl-CoA N-acyltransferases superfamily protein isoform 2 [Theobroma cacao] gi|508708541|gb|EOY00438.1| chr2 21718073 21721108 +
2 domain predictions
1 GO term
Lj2g3v1966140.1
n.a. Acyl-CoA N-acyltransferases (NAT) superfamily protein [Theobroma cacao] gi|508699759|gb|EOX91655.1| chr2 28556270 28558209 +
3 domain predictions
1 GO term
Lj2g3v1979710.1
n.a. PREDICTED: amino-acid acetyltransferase-like isoform X1 [Cicer arietinum] gi|502160640|ref|XP_004511825.1| chr2 28778791 28783061 +
3 domain predictions
1 GO term
Lj2g3v2280600.1
n.a. Chromodomain helicase-DNA-binding protein [Medicago truncatula] gi|357490843|ref|XP_003615709.1| chr2 33319129 33326480 +
2 domain predictions
1 GO term
Lj2g3v2314880.1
n.a. Acyl-CoA N-acyltransferases superfamily protein [Theobroma cacao] gi|508787288|gb|EOY34544.1| chr2 33499794 33501782 -
3 domain predictions
1 GO term
Lj2g3v2658290.1
n.a. PREDICTED: histone acetyltransferase type B catalytic subunit-like [Glycine max] gi|356551642|ref|XP_003544183.1| chr2 35765844 35769807 -
2 domain predictions
1 GO term
Lj3g3v0824660.1
n.a. PREDICTED: N-alpha-acetyltransferase 10-like [Cicer arietinum] gi|502169251|ref|XP_004514569.1| chr3 10148918 10150467 +
3 domain predictions
1 GO term
Lj3g3v0824670.1
n.a. PREDICTED: N-alpha-acetyltransferase 10-like [Cicer arietinum] gi|502169251|ref|XP_004514569.1| chr3 10148918 10150611 +
3 domain predictions
1 GO term
Lj3g3v1061160.1
n.a. histone H3 acetyltransferase IDM1 [Arabidopsis thaliana] gi|15232453|ref|NP_188116.1| chr3 14127910 14137617 +
2 domain predictions
1 GO term
Lj3g3v2097100.1
n.a. Acyl-CoA N-acyltransferases superfamily protein [Theobroma cacao] gi|508778804|gb|EOY26060.1| chr3 26689337 26693231 -
3 domain predictions
1 GO term
Lj3g3v3031030.1
n.a. Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 3 [Theobroma cacao] gi|508716123|gb|EOY08020.1| chr3 37888359 37891338 +
2 domain predictions
1 GO term
Lj3g3v3639550.1
n.a. PREDICTED: N-alpha-acetyltransferase 60-like [Glycine max] gi|356538503|ref|XP_003537743.1| chr3 44152938 44154756 -
3 domain predictions
1 GO term
Lj4g3v0755920.1
n.a. PREDICTED: amino-acid acetyltransferase-like [Glycine max] gi|356565491|ref|XP_003550973.1| chr4 11796065 11801199 +
3 domain predictions
1 GO term
Lj4g3v2023770.1
n.a. Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao] gi|508784353|gb|EOY31609.1| chr4 28168344 28171951 -
3 domain predictions
1 GO term
Lj4g3v2786840.3
n.a. PREDICTED: UPF0202 protein At1g10490-like [Cicer arietinum] gi|502139993|ref|XP_004504007.1| chr4 37338504 37347066 +
2 domain predictions
1 GO term
Lj5g3v1813840.1
n.a. Acyl-CoA N-acyltransferases superfamily protein isoform 1 [Theobroma cacao] gi|508726760|gb|EOY18657.1| chr5 26011539 26014710 -
3 domain predictions
1 GO term
Lj6g3v1187480.1
n.a. acyl-CoA N-acyltransferases-like protein [Arabidopsis thaliana] gi|30678254|ref|NP_671784.2| chr6 14592379 14594472 +
3 domain predictions
1 GO term
Lj6g3v1187480.2
n.a. acyl-CoA N-acyltransferases-like protein [Arabidopsis thaliana] gi|30678254|ref|NP_671784.2| chr6 14592379 14594472 +
3 domain predictions
1 GO term
LotjaGi1g1v0013200.1
n.a. Glucosamine 6-phosphate N-acetyltransferase; TAIR: AT5G15770.1 glucose-6-phosphate acetyltransferase 1; Swiss-Prot: sp|Q9LFU9|GNA1_ARATH Glucosamine 6-phosphate N-acetyltransferase; TrEMBL-Plants: tr|G7KQU8|G7KQU8_MEDTR Glucosamine 6-phosphate N-acetyltransferase; Found in the gene: LotjaGi1g1v0013200 LjG1.1_chr1 1690890 1696689 -
3 domain predictions
1 GO term
LotjaGi1g1v0086700.1
n.a. Histone acetyltransferase; TAIR: AT5G56740.1 histone acetyltransferase of the GNAT family 2; Swiss-Prot: sp|Q9FJT8|HATB_ARATH Histone acetyltransferase type B catalytic subunit; TrEMBL-Plants: tr|I1M828|I1M828_SOYBN Histone acetyltransferase; Found in the gene: LotjaGi1g1v0086700 LjG1.1_chr1 12529865 12534055 +
2 domain predictions
1 GO term
LotjaGi1g1v0116600.1
n.a. Acyl-CoA N-acyltransferases superfamily protein; TAIR: AT2G30090.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein; Swiss-Prot: sp|O64815|HLS1L_ARATH Probable N-acetyltransferase HLS1-like; TrEMBL-Plants: tr|A0A151RYB8|A0A151RYB8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0116600 LjG1.1_chr1 18349094 18351161 +
3 domain predictions
1 GO term
LotjaGi1g1v0118400_LC.1
n.a. RING/FYVE/PHD zinc finger protein; TAIR: AT5G58610.4 PHD finger transcription factor; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|G7JZJ8|G7JZJ8_MEDTR PHD zinc finger protein; Found in the gene: LotjaGi1g1v0118400_LC LjG1.1_chr1 18696963 18703992 -
3 domain predictions
1 GO term
LotjaGi1g1v0172200.1
n.a. N-acetyltransferase, putative; TAIR: AT5G11340.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein; Swiss-Prot: sp|Q0IIJ0|NAA50_BOVIN N-alpha-acetyltransferase 50; TrEMBL-Plants: tr|A0A0L9UV05|A0A0L9UV05_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0172200 LjG1.1_chr1 32796042 32803861 +
3 domain predictions
1 GO term
LotjaGi1g1v0172200.2
n.a. N-alpha-acetyltransferase 50; TAIR: AT5G11340.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein; Swiss-Prot: sp|Q0IIJ0|NAA50_BOVIN N-alpha-acetyltransferase 50; TrEMBL-Plants: tr|A0A0L9UV05|A0A0L9UV05_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0172200 LjG1.1_chr1 32798341 32803152 +
3 domain predictions
1 GO term