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Lj1g3v0317990.1

Overview

Field Value
Gene ID Lj1g3v0317990
Transcript ID Lj1g3v0317990.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: reticulocalbin-3-like [Glycine max] gi|356551375|ref|XP_003544051.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 5 5 – –
PANTHER
PTHR10827
4 288 285 6.80E-87 –
PANTHER
PTHR10827:SF54
4 288 285 6.80E-87 –
TMHMM
TMhelix
5 27 23 – –
Phobius
TRANSMEMBRANE
6 27 22 – –
Phobius
CYTOPLASMIC_DOMAIN
28 288 261 – –
SUPERFAMILY
SSF47473
107 265 159 3.37E-15
IPR011992
Gene3D
G3DSA:1.10.238.10
111 178 68 3.60E-05
IPR011992
ProSiteProfiles
PS50222
170 189 20 6.898
IPR002048
Gene3D
G3DSA:1.10.238.10
179 264 86 6.20E-10
IPR011992
ProSiteProfiles
PS50222
198 233 36 8.516
IPR002048
Pfam
PF10591
206 262 57 1.70E-04
IPR019577
ProSitePatterns
PS00018
211 223 13 –
IPR018247
ProSitePatterns
PS00018
250 262 13 –
IPR018247

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v0317990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0317990.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.