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Lj1g3v0318300.1

Overview

Field Value
Gene ID Lj1g3v0318300
Transcript ID Lj1g3v0318300.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: superoxide dismutase [Cu]-Zn] gi|470102209|ref|XP_004287550.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF49329
2 46 45 6.41E-15
IPR001424
Gene3D
G3DSA:2.60.40.200
2 47 46 1.70E-16
IPR001424
PANTHER
PTHR10003
2 47 46 2.10E-26
IPR024134
PANTHER
PTHR10003:SF34
2 47 46 2.10E-26
IPR031074
Pfam
PF00080
3 47 45 8.80E-10
IPR001424

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006801
Biological process Superoxide metabolic process The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v0318300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0318300.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.