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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0449000 |
| Transcript ID | Lj1g3v0449000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Ubiquitin carboxyl-terminal hydrolase-related protein isoform 1 [Theobroma cacao] gi|508774427|gb|EOY21683.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 120 | 120 | 0 | – | |
| PANTHER | 1 | 120 | 120 | 0 | – | |
| Pfam | 1 | 527 | 527 | 5.10E-165 | ||
| PANTHER | 177 | 642 | 466 | 0 | – | |
| PANTHER | 177 | 642 | 466 | 0 | – | |
| MobiDBLite | 619 | 650 | 32 | – | – | |
| PANTHER | 678 | 1284 | 607 | 0 | – | |
| PANTHER | 678 | 1284 | 607 | 0 | – | |
| Coils | 688 | 722 | 35 | – | – | |
| Pfam | 958 | 1266 | 309 | 2.20E-23 | ||
| SUPERFAMILY | 958 | 1272 | 315 | 4.12E-31 | – | |
| ProSiteProfiles | 958 | 1296 | 339 | 20.977 | ||
| CDD | 1049 | 1265 | 217 | 5.04E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of Lj1g3v0449000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0449000.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.