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Lj1g3v0589920.1

Overview

Field Value
Gene ID Lj1g3v0589920
Transcript ID Lj1g3v0589920.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polygalacturonase-like [Cicer arietinum] gi|502086987|ref|XP_004488391.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31375:SF37
1 317 317 4.40E-195 –
PANTHER
PTHR31375
1 317 317 4.40E-195 –
SUPERFAMILY
SSF51126
2 319 318 4.94E-94
IPR011050
Gene3D
G3DSA:2.160.20.10
2 323 322 2.40E-97
IPR012334
Pfam
PF00295
2 311 310 2.60E-93
IPR000743
SMART
SM00710
108 134 27 790
IPR006626
SMART
SM00710
135 156 22 2700
IPR006626
SMART
SM00710
158 178 21 2200
IPR006626
ProSitePatterns
PS00502
165 178 14 –
IPR000743
SMART
SM00710
188 209 22 120
IPR006626
SMART
SM00710
219 240 22 9500
IPR006626

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004650
Molecular function Polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v0589920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0589920.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.