Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v0752220.1

Overview

Field Value
Gene ID Lj1g3v0752220
Transcript ID Lj1g3v0752220.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: auxin response factor 17-like isoform X1 [Cicer arietinum] gi|502175040|ref|XP_004515659.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 379 379 – –
PANTHER
PTHR31384:SF19
16 260 245 3.30E-192 –
PANTHER
PTHR31384
16 260 245 3.30E-192 –
Gene3D
G3DSA:2.40.330.10
141 249 109 2.30E-34
IPR015300
SUPERFAMILY
SSF101936
142 264 123 2.22E-29
IPR015300
CDD
cd10017
145 242 98 7.50E-20
IPR003340
ProSiteProfiles
PS50863
146 248 103 13.098
IPR003340
SMART
SM01019
146 248 103 3.60E-18
IPR003340
Pfam
PF02362
146 247 102 2.50E-22
IPR003340
MobiDBLite
mobidb-lite
267 294 28 – –
PANTHER
PTHR31384:SF19
290 385 96 3.30E-192 –
PANTHER
PTHR31384
290 385 96 3.30E-192 –
Pfam
PF06507
301 384 84 3.90E-29
IPR010525
Phobius
TRANSMEMBRANE
380 399 20 – –
Phobius
CYTOPLASMIC_DOMAIN
400 400 1 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0009725
Biological process Response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v0752220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0752220.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.