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Lj1g3v1019010.1

Overview

Field	Value
Gene ID	Lj1g3v1019010
Transcript ID	Lj1g3v1019010.1
Lotus japonicus genome version	MG20 v3.0
Description	Neuroblastoma-amplified sequence [Medicago truncatula] gi\|357464029\|ref\|XP_003602296.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR15922:SF2 View details on PTHR15922:SF2 Search for proteins/transripts with this domain View external data on PTHR15922:SF2	1	666	666	0	–
PANTHER	PTHR15922 View details on PTHR15922 Search for proteins/transripts with this domain View external data on PTHR15922	1	666	666	0	–
Pfam	PF08314 View details on PF08314 Search for proteins/transripts with this domain View external data on PF08314	8	313	306	3.80E-15	IPR013244 Show description in modal box View details on IPR013244 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF08314 View details on PF08314 Search for proteins/transripts with this domain View external data on PF08314	353	543	191	8.60E-14	IPR013244 Show description in modal box View details on IPR013244 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR15922 View details on PTHR15922 Search for proteins/transripts with this domain View external data on PTHR15922	687	1382	696	0	–
PANTHER	PTHR15922:SF2 View details on PTHR15922:SF2 Search for proteins/transripts with this domain View external data on PTHR15922:SF2	687	1382	696	0	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006890 View details of GO:0006890 AmiGO InterPro QuickGO	Biological process	Retrograde vesicle-mediated transport, Golgi to ER	The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.	Subterm of View details of GO:0048193

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj1g3v1019010.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1019010.1, powered by CORGI.

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