Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v1526040.1

Overview

Field	Value
Gene ID	Lj1g3v1526040
Transcript ID	Lj1g3v1526040.1
Lotus japonicus genome version	MG20 v3.0
Description	fiber protein Fb19 [Gossypium barbadense] gi\|30841458\|gb\|AAP34366.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR22951 View details on PTHR22951 Search for proteins/transripts with this domain View external data on PTHR22951	1	337	337	2.00E-174	–
PANTHER	PTHR22951:SF24 View details on PTHR22951:SF24 Search for proteins/transripts with this domain View external data on PTHR22951:SF24	1	337	337	2.00E-174	–
ProSiteProfiles	PS50942 View details on PS50942 Search for proteins/transripts with this domain View external data on PS50942	23	161	139	12.128	IPR013809 Show description in modal box View details on IPR013809 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.25.40.90 View details on G3DSA:1.25.40.90 Search for proteins/transripts with this domain View external data on G3DSA:1.25.40.90	29	157	129	3.90E-21	IPR008942 Show description in modal box View details on IPR008942 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00273 View details on SM00273 Search for proteins/transripts with this domain View external data on SM00273	29	161	133	0.0031	IPR013809 Show description in modal box View details on IPR013809 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF48464 View details on SSF48464 Search for proteins/transripts with this domain View external data on SSF48464	31	158	128	4.19E-17	IPR008942 Show description in modal box View details on IPR008942 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF07651 View details on PF07651 Search for proteins/transripts with this domain View external data on PF07651	32	275	244	1.90E-13	IPR011417 Show description in modal box View details on IPR011417 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005543 View details of GO:0005543 AmiGO InterPro QuickGO	Molecular function	Phospholipid binding	Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.	Subterm of View details of GO:0008289 View details of GO:0043168

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v1526040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1526040.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.