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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011417
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We have found 36 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.843s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0158279.1
n.a. epsin N-terminal homology (ENTH) domain-containing protein [Medicago truncatula] gi|357466187|ref|XP_003603378.1| chr0 74132066 74132554 -
2 domain predictions
1 GO term
Lj0g3v0158299.1
n.a. epsin N-terminal homology (ENTH) domain-containing protein [Medicago truncatula] gi|357466187|ref|XP_003603378.1| chr0 74132785 74133582 -
2 domain predictions
1 GO term
Lj1g3v1526040.1
n.a. fiber protein Fb19 [Gossypium barbadense] gi|30841458|gb|AAP34366.1| chr1 18159861 18161303 +
2 domain predictions
1 GO term
Lj1g3v1889550.1
n.a. Epsin N-terminal domain-containing protein / clathrin assembly protein-related isoform 1 [Theobroma cacao] gi|508782208|gb|EOY29464.1| chr1 22586674 22590430 -
2 domain predictions
1 GO term
Lj2g3v0521150.1
n.a. n.a. chr2 6901893 6911480 +
2 domain predictions
1 GO term
Lj4g3v0336780.1
n.a. ENTH/ANTH/VHS superfamily protein [Theobroma cacao] gi|508706974|gb|EOX98870.1| chr4 4160933 4161585 +
2 domain predictions
1 GO term
Lj4g3v0336790.1
n.a. ENTH/ANTH/VHS superfamily protein [Theobroma cacao] gi|508706974|gb|EOX98870.1| chr4 4162500 4162859 +
2 domain predictions
1 GO term
Lj4g3v1881390.1
n.a. epsin N-terminal homology (ENTH) domain-containing protein [Medicago truncatula] gi|357478179|ref|XP_003609375.1| chr4 26447614 26450273 -
2 domain predictions
1 GO term
Lj4g3v1881980.1
n.a. ENTH/ANTH/VHS superfamily protein isoform 1 [Theobroma cacao] gi|508783924|gb|EOY31180.1| chr4 26772290 26777778 -
2 domain predictions
1 GO term
Lj4g3v2137090.1
n.a. Phosphoprotein-like protein [Medicago truncatula] gi|357479541|ref|XP_003610056.1| chr4 29351363 29353960 -
2 domain predictions
1 GO term
Lj4g3v2401050.1
n.a. ENTH/VHS/GAT family protein [Arabidopsis thaliana] gi|15222535|ref|NP_173895.1| chr4 33311278 33313331 -
2 domain predictions
1 GO term
Lj4g3v2434830.1
n.a. ENTH/ANTH/VHS superfamily protein [Theobroma cacao] gi|508709143|gb|EOY01040.1| chr4 33554721 33562466 -
2 domain predictions
1 GO term
Lj4g3v2731610.1
n.a. fiber protein Fb19 [Gossypium barbadense] gi|30841458|gb|AAP34366.1| chr4 36750129 36751860 -
2 domain predictions
1 GO term
Lj6g3v2221960.1
n.a. ENTH/ANTH/VHS superfamily protein [Theobroma cacao] gi|508706974|gb|EOX98870.1| chr6 25937144 25938571 -
2 domain predictions
1 GO term
Lj6g3v2221970.1
n.a. ENTH/ANTH/VHS superfamily protein [Theobroma cacao] gi|508706974|gb|EOX98870.1| chr6 25938802 25939304 -
2 domain predictions
1 GO term
Lj6g3v2221980.1
n.a. ENTH/ANTH/VHS superfamily protein [Theobroma cacao] gi|508706974|gb|EOX98870.1| chr6 25939358 25940410 -
2 domain predictions
1 GO term
LotjaGi1g1v0341300.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT4G40080.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8L936|CAP16_ARATH Putative clathrin assembly protein At4g40080; TrEMBL-Plants: tr|A0A0L9UG74|A0A0L9UG74_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0341300 LjG1.1_chr1 80338552 80340166 +
2 domain predictions
1 GO term
LotjaGi1g1v0382900.1
n.a. Clathrin assembly family protein; TAIR: AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein; Swiss-Prot: sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430; TrEMBL-Plants: tr|A0A151RLK9|A0A151RLK9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi1g1v0382900 LjG1.1_chr1 86633021 86636671 +
2 domain predictions
1 GO term
LotjaGi1g1v0382900.2
n.a. Clathrin assembly family protein; TAIR: AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein; Swiss-Prot: sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430; TrEMBL-Plants: tr|A0A151RLK9|A0A151RLK9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi1g1v0382900 LjG1.1_chr1 86633615 86636163 +
2 domain predictions
1 GO term
LotjaGi1g1v0382900.3
n.a. Clathrin assembly family protein; TAIR: AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein; Swiss-Prot: sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430; TrEMBL-Plants: tr|A0A151RLK9|A0A151RLK9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi1g1v0382900 LjG1.1_chr1 86633644 86635617 +
2 domain predictions
1 GO term
LotjaGi2g1v0007300.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT1G25240.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|Q9FRH3|CAP13_ARATH Putative clathrin assembly protein At1g25240; TrEMBL-Plants: tr|A0A151R3S9|A0A151R3S9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi2g1v0007300 LjG1.1_chr2 2642398 2644705 -
2 domain predictions
1 GO term
LotjaGi4g1v0032300.1
n.a. Clathrin assembly family protein; TAIR: AT1G03050.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050; TrEMBL-Plants: tr|A0A1J7IJM8|A0A1J7IJM8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0032300 LjG1.1_chr4 3964684 3969400 +
2 domain predictions
1 GO term
LotjaGi4g1v0273600.1
n.a. Clathrin assembly family protein; TAIR: AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein; Swiss-Prot: sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430; TrEMBL-Plants: tr|I1LZP6|I1LZP6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0273600 LjG1.1_chr4 64277510 64280327 -
2 domain predictions
1 GO term
LotjaGi4g1v0275800.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT5G35200.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200; TrEMBL-Plants: tr|I3SKY7|I3SKY7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0275800 LjG1.1_chr4 64612776 64619032 -
2 domain predictions
1 GO term
LotjaGi4g1v0275800.2
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT5G35200.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200; TrEMBL-Plants: tr|I3SKY7|I3SKY7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0275800 LjG1.1_chr4 64612791 64619161 -
2 domain predictions
1 GO term
LotjaGi4g1v0275800.3
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT5G35200.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200; TrEMBL-Plants: tr|I3SKY7|I3SKY7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0275800 LjG1.1_chr4 64613551 64618469 -
2 domain predictions
1 GO term
LotjaGi4g1v0305400.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT4G25940.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940; TrEMBL-Plants: tr|I1LVM2|I1LVM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0305400 LjG1.1_chr4 68109096 68114381 -
2 domain predictions
1 GO term
LotjaGi4g1v0354300.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT1G25240.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|Q9FRH3|CAP13_ARATH Putative clathrin assembly protein At1g25240; TrEMBL-Plants: tr|I1K3B5|I1K3B5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0354300 LjG1.1_chr4 73276505 73278781 -
2 domain predictions
1 GO term
LotjaGi4g1v0358800.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT2G01600.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600; TrEMBL-Plants: tr|A0A151T2E9|A0A151T2E9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi4g1v0358800 LjG1.1_chr4 73755873 73764095 -
2 domain predictions
1 GO term
LotjaGi4g1v0393700.1
n.a. ENTH/ANTH/VHS superfamily protein, putative; TAIR: AT4G40080.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8L936|CAP16_ARATH Putative clathrin assembly protein At4g40080; TrEMBL-Plants: tr|A0A1J7GIT1|A0A1J7GIT1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0393700 LjG1.1_chr4 77213839 77215592 -
2 domain predictions
1 GO term
LotjaGi6g1v0022100.1
n.a. Clathrin assembly protein; TAIR: AT1G05020.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180; TrEMBL-Plants: tr|K7LYR1|K7LYR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022100 LjG1.1_chr6 4175036 4178090 +
2 domain predictions
1 GO term
LotjaGi6g1v0022100.2
n.a. Clathrin assembly protein; TAIR: AT1G05020.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180; TrEMBL-Plants: tr|K7LYR1|K7LYR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022100 LjG1.1_chr6 4175342 4177530 +
2 domain predictions
1 GO term
LotjaGi6g1v0199000.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT5G35200.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200; TrEMBL-Plants: tr|A0A072TEL9|A0A072TEL9_MEDTR Clathrin assembly protein; Found in the gene: LotjaGi6g1v0199000 LjG1.1_chr6 49574298 49578860 -
2 domain predictions
1 GO term
LotjaGi6g1v0235700.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT4G25940.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940; TrEMBL-Plants: tr|A0A151T5F7|A0A151T5F7_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi6g1v0235700 LjG1.1_chr6 54564357 54569807 +
2 domain predictions
1 GO term
LotjaGi6g1v0355400.1
n.a. Clathrin assembly family protein; TAIR: AT1G03050.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050; TrEMBL-Plants: tr|A0A1J7GTW2|A0A1J7GTW2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0355400 LjG1.1_chr6 66730124 66733561 -
2 domain predictions
1 GO term
LotjaGi6g1v0355400.2
n.a. Clathrin assembly family protein; TAIR: AT1G03050.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050; TrEMBL-Plants: tr|A0A1J7GTW2|A0A1J7GTW2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0355400 LjG1.1_chr6 66730463 66732623 -
2 domain predictions
1 GO term