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Lj1g3v1548900.1

Overview

Field Value
Gene ID Lj1g3v1548900
Transcript ID Lj1g3v1548900.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Glycine max] gi|356497716|ref|XP_003517705.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19877
4 211 208 2.00E-109 –
SUPERFAMILY
SSF50978
19 204 186 5.68E-36
IPR017986
Gene3D
G3DSA:2.130.10.10
19 203 185 5.60E-37
IPR015943
SMART
SM00320
20 59 40 4.80E-06
IPR001680
Pfam
PF00400
21 59 39 0.024
IPR001680
ProSiteProfiles
PS50294
27 113 87 21.041
IPR017986
ProSiteProfiles
PS50082
27 68 42 12.012
IPR001680
ProSitePatterns
PS00678
46 60 15 –
IPR019775
SMART
SM00320
62 104 43 2.10E-07
IPR001680
ProSiteProfiles
PS50082
72 113 42 14.819
IPR001680
Pfam
PF00400
73 104 32 8.30E-06
IPR001680
SMART
SM00320
107 146 40 150
IPR001680
SMART
SM00320
162 201 40 2.30E-05
IPR001680
Pfam
PF00400
168 199 32 3.10E-06
IPR001680
ProSiteProfiles
PS50294
169 211 43 9.678
IPR017986
ProSiteProfiles
PS50082
169 199 31 11.143
IPR001680

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v1548900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1548900.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.